Literature DB >> 23706632

iPOP goes the world: integrated personalized Omics profiling and the road toward improved health care.

Jennifer Li-Pook-Than1, Michael Snyder.   

Abstract

The health of an individual depends upon their DNA as well as upon environmental factors (environome or exposome). It is expected that although the genome is the blueprint of an individual, its analysis with that of the other omes such as the DNA methylome, the transcriptome, proteome, and metabolome will further provide a dynamic assessment of the physiology and health state of an individual. This review will help to categorize the current progress of omics analyses and how omics integration can be used for medical research. We believe that integrative personal omics profiling (iPOP) is a stepping stone to a new road to personalized health care and may improve disease risk assessment, accuracy of diagnosis, disease monitoring, targeted treatments, and understanding the biological processes of disease states for their prevention.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 23706632      PMCID: PMC4154623          DOI: 10.1016/j.chembiol.2013.05.001

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  21 in total

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Authors:  G W Beadle; E L Tatum
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2.  Circos: an information aesthetic for comparative genomics.

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Authors:  Michael Snyder; Jiang Du; Mark Gerstein
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Authors:  George Poste
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Authors:  Raquel de Sousa Abreu; Luiz O Penalva; Edward M Marcotte; Christine Vogel
Journal:  Mol Biosyst       Date:  2009-10-01

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Journal:  Nature       Date:  2004-10-21       Impact factor: 49.962

7.  Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.

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Journal:  Nature       Date:  2007-06-14       Impact factor: 49.962

8.  Additional value of EGFR downstream signaling phosphoprotein expression to KRAS status for response to anti-EGFR antibodies in colorectal cancer.

Authors:  Geraldine Perkins; Astrid Lièvre; Carole Ramacci; Tchao Méatchi; Aurélien de Reynies; Jean-François Emile; Valérie Boige; Gorana Tomasic; Jean-Baptiste Bachet; Fréderic Bibeau; Olivier Bouché; Frédérique Penault-Llorca; Jean-Louis Merlin; Pierre Laurent-Puig
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9.  Ensembl 2011.

Authors:  Paul Flicek; M Ridwan Amode; Daniel Barrell; Kathryn Beal; Simon Brent; Yuan Chen; Peter Clapham; Guy Coates; Susan Fairley; Stephen Fitzgerald; Leo Gordon; Maurice Hendrix; Thibaut Hourlier; Nathan Johnson; Andreas Kähäri; Damian Keefe; Stephen Keenan; Rhoda Kinsella; Felix Kokocinski; Eugene Kulesha; Pontus Larsson; Ian Longden; William McLaren; Bert Overduin; Bethan Pritchard; Harpreet Singh Riat; Daniel Rios; Graham R S Ritchie; Magali Ruffier; Michael Schuster; Daniel Sobral; Giulietta Spudich; Y Amy Tang; Stephen Trevanion; Jana Vandrovcova; Albert J Vilella; Simon White; Steven P Wilder; Amonida Zadissa; Jorge Zamora; Bronwen L Aken; Ewan Birney; Fiona Cunningham; Ian Dunham; Richard Durbin; Xosé M Fernández-Suarez; Javier Herrero; Tim J P Hubbard; Anne Parker; Glenn Proctor; Jan Vogel; Stephen M J Searle
Journal:  Nucleic Acids Res       Date:  2010-11-02       Impact factor: 16.971

10.  Integrated genomic analyses of ovarian carcinoma.

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Journal:  Nature       Date:  2011-06-29       Impact factor: 49.962

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  23 in total

1.  Longitudinal personal DNA methylome dynamics in a human with a chronic condition.

Authors:  Rui Chen; Lin Xia; Kailing Tu; Meixue Duan; Kimberly Kukurba; Jennifer Li-Pook-Than; Dan Xie; Michael Snyder
Journal:  Nat Med       Date:  2018-11-05       Impact factor: 53.440

2.  MOPED 2.5--an integrated multi-omics resource: multi-omics profiling expression database now includes transcriptomics data.

Authors:  Elizabeth Montague; Larissa Stanberry; Roger Higdon; Imre Janko; Elaine Lee; Nathaniel Anderson; John Choiniere; Elizabeth Stewart; Gregory Yandl; William Broomall; Natali Kolker; Eugene Kolker
Journal:  OMICS       Date:  2014-06

Review 3.  The IBD interactome: an integrated view of aetiology, pathogenesis and therapy.

Authors:  Heitor S P de Souza; Claudio Fiocchi; Dimitrios Iliopoulos
Journal:  Nat Rev Gastroenterol Hepatol       Date:  2017-08-23       Impact factor: 46.802

Review 4.  System biology approach intersecting diet and cell metabolism with pathogenesis of brain disorders.

Authors:  Fernando Gomez-Pinilla; Xia Yang
Journal:  Prog Neurobiol       Date:  2018-07-27       Impact factor: 11.685

5.  Personalized medicine: from genotypes, molecular phenotypes and the quantified self, towards improved medicine.

Authors:  Joel T Dudley; Jennifer Listgarten; Oliver Stegle; Steven E Brenner; Leopold Parts
Journal:  Pac Symp Biocomput       Date:  2015

6.  The Exposome: A New Frontier for Education.

Authors:  Kristine K Dennis; Dean P Jones
Journal:  Am Biol Teach       Date:  2016-09       Impact factor: 0.342

7.  Use of the "Exposome" in the Practice of Epidemiology: A Primer on -Omic Technologies.

Authors:  D Gayle DeBord; Tania Carreón; Thomas J Lentz; Paul J Middendorf; Mark D Hoover; Paul A Schulte
Journal:  Am J Epidemiol       Date:  2016-08-15       Impact factor: 4.897

Review 8.  Interrogating host immunity to predict treatment response in inflammatory bowel disease.

Authors:  Jonathan L Digby-Bell; Raja Atreya; Giovanni Monteleone; Nick Powell
Journal:  Nat Rev Gastroenterol Hepatol       Date:  2019-11-25       Impact factor: 46.802

9.  Integrative analysis of longitudinal metabolomics data from a personal multi-omics profile.

Authors:  Larissa Stanberry; George I Mias; Winston Haynes; Roger Higdon; Michael Snyder; Eugene Kolker
Journal:  Metabolites       Date:  2013-09-03

10.  Big Data in Biology and Medicine: Based on material from a joint workshop with representatives of the international Data-Enabled Life Science Alliance, July 4, 2013, Moscow, Russia.

Authors:  O P Trifonova; V A Il'in; E V Kolker; A V Lisitsa
Journal:  Acta Naturae       Date:  2013-07       Impact factor: 1.845

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