Literature DB >> 21760622

Hfq and its constellation of RNA.

Jörg Vogel1, Ben F Luisi.   

Abstract

Hfq is an RNA-binding protein that is common to diverse bacterial lineages and has key roles in the control of gene expression. By facilitating the pairing of small RNAs with their target mRNAs, Hfq affects the translation and turnover rates of specific transcripts and contributes to complex post-transcriptional networks. These functions of Hfq can be attributed to its ring-like oligomeric architecture, which presents two non-equivalent binding surfaces that are capable of multiple interactions with RNA molecules. Distant homologues of Hfq occur in archaea and eukaryotes, reflecting an ancient origin for the protein family and hinting at shared functions. In this Review, we describe the salient structural and functional features of Hfq and discuss possible mechanisms by which this protein can promote RNA interactions to catalyse specific and rapid regulatory responses in vivo.

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Year:  2011        PMID: 21760622      PMCID: PMC4615618          DOI: 10.1038/nrmicro2615

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  159 in total

1.  Two antisense RNAs target the transcriptional regulator CsgD to inhibit curli synthesis.

Authors:  Erik Holmqvist; Johan Reimegård; Maaike Sterk; Nina Grantcharova; Ute Römling; Eduard Gerhart Heinrich Wagner
Journal:  EMBO J       Date:  2010-04-20       Impact factor: 11.598

Review 2.  All things must pass: contrasts and commonalities in eukaryotic and bacterial mRNA decay.

Authors:  Joel G Belasco
Journal:  Nat Rev Mol Cell Biol       Date:  2010-06-03       Impact factor: 94.444

3.  Evidence for an autonomous 5' target recognition domain in an Hfq-associated small RNA.

Authors:  Kai Papenfort; Marie Bouvier; Franziska Mika; Cynthia M Sharma; Jörg Vogel
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-08       Impact factor: 11.205

Review 4.  Regulation of translation via mRNA structure in prokaryotes and eukaryotes.

Authors:  Marilyn Kozak
Journal:  Gene       Date:  2005-10-05       Impact factor: 3.688

5.  Host factor for coliphage Q beta RNA replication: presence in procaryotes and association with the 30S ribosomal subunit in Escherichia coli.

Authors:  M S DuBow; T Ryan; R A Young; T Blumenthal
Journal:  Mol Gen Genet       Date:  1977-05-20

6.  Factor fraction required for the synthesis of bacteriophage Qbeta-RNA.

Authors:  M T Franze de Fernandez; L Eoyang; J T August
Journal:  Nature       Date:  1968-08-10       Impact factor: 49.962

7.  Translation-independent localization of mRNA in E. coli.

Authors:  Keren Nevo-Dinur; Anat Nussbaum-Shochat; Sigal Ben-Yehuda; Orna Amster-Choder
Journal:  Science       Date:  2011-02-25       Impact factor: 47.728

8.  The archaeal Lsm protein binds to small RNAs.

Authors:  Susan Fischer; Juliane Benz; Bettina Späth; Lisa-Katharina Maier; Julia Straub; Michaela Granzow; Monika Raabe; Henning Urlaub; Jan Hoffmann; Bernd Brutschy; Thorsten Allers; Jörg Soppa; Anita Marchfelder
Journal:  J Biol Chem       Date:  2010-09-07       Impact factor: 5.157

9.  Spot 42 RNA mediates discoordinate expression of the E. coli galactose operon.

Authors:  Thorleif Møller; Thomas Franch; Christina Udesen; Kenn Gerdes; Poul Valentin-Hansen
Journal:  Genes Dev       Date:  2002-07-01       Impact factor: 11.361

10.  Identification of the Hfq-binding site on DsrA RNA: Hfq binds without altering DsrA secondary structure.

Authors:  Cristin C Brescia; Peter J Mikulecky; Andrew L Feig; Darren D Sledjeski
Journal:  RNA       Date:  2003-01       Impact factor: 4.942

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  463 in total

1.  Noncanonical repression of translation initiation through small RNA recruitment of the RNA chaperone Hfq.

Authors:  Guillaume Desnoyers; Eric Massé
Journal:  Genes Dev       Date:  2012-04-01       Impact factor: 11.361

2.  Multiple factors dictate target selection by Hfq-binding small RNAs.

Authors:  Chase L Beisel; Taylor B Updegrove; Ben J Janson; Gisela Storz
Journal:  EMBO J       Date:  2012-03-02       Impact factor: 11.598

3.  The functional Hfq-binding module of bacterial sRNAs consists of a double or single hairpin preceded by a U-rich sequence and followed by a 3' poly(U) tail.

Authors:  Hirokazu Ishikawa; Hironori Otaka; Kimika Maki; Teppei Morita; Hiroji Aiba
Journal:  RNA       Date:  2012-03-27       Impact factor: 4.942

4.  Small RNA binding to the lateral surface of Hfq hexamers and structural rearrangements upon mRNA target recognition.

Authors:  Evelyn Sauer; Steffen Schmidt; Oliver Weichenrieder
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-29       Impact factor: 11.205

5.  Alternative Hfq-sRNA interaction modes dictate alternative mRNA recognition.

Authors:  Daniel J Schu; Aixia Zhang; Susan Gottesman; Gisela Storz
Journal:  EMBO J       Date:  2015-09-15       Impact factor: 11.598

6.  Comprehensive analysis reveals how single nucleotides contribute to noncoding RNA function in bacterial quorum sensing.

Authors:  Steven T Rutherford; Julie S Valastyan; Thibaud Taillefumier; Ned S Wingreen; Bonnie L Bassler
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-19       Impact factor: 11.205

7.  Translation inhibition from a distance: The small RNA SgrS silences a ribosomal protein S1-dependent enhancer.

Authors:  Muhammad S Azam; Carin K Vanderpool
Journal:  Mol Microbiol       Date:  2020-05-02       Impact factor: 3.501

8.  sRNA-Mediated Control of Transcription Termination in E. coli.

Authors:  Nadezda Sedlyarova; Ilya Shamovsky; Binod K Bharati; Vitaly Epshtein; Jiandong Chen; Susan Gottesman; Renée Schroeder; Evgeny Nudler
Journal:  Cell       Date:  2016-09-22       Impact factor: 41.582

9.  Transcriptomic profiling of the oyster pathogen Vibrio splendidus opens a window on the evolutionary dynamics of the small RNA repertoire in the Vibrio genus.

Authors:  Claire Toffano-Nioche; An N Nguyen; Claire Kuchly; Alban Ott; Daniel Gautheret; Philippe Bouloc; Annick Jacq
Journal:  RNA       Date:  2012-10-24       Impact factor: 4.942

Review 10.  Thermal control of virulence factors in bacteria: a hot topic.

Authors:  Oliver Lam; Jun Wheeler; Christoph M Tang
Journal:  Virulence       Date:  2014       Impact factor: 5.882

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