Literature DB >> 23698792

Dual recognition of the human telomeric G-quadruplex by a neomycin-anthraquinone conjugate.

Nihar Ranjan1, Erik Davis, Liang Xue, Dev P Arya.   

Abstract

The authors report the recognition of a G-quadruplex formed by four repeat human telomeric DNA with aminosugar intercalator conjugates. The recognition of the G-quadruplex through dual binding mode ligands significantly increased the affinity of ligands for the G-quadruplex. One such example is a neomycin-anthraquinone conjugate (2) which exhibited nanomolar affinity for the quadruplex, and the affinity of (2) is nearly 1000 fold higher for the human telomeric G-quadruplex DNA than its constituent units, neomycin and anthraquinone.

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Year:  2013        PMID: 23698792      PMCID: PMC3977216          DOI: 10.1039/c3cc42721h

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN: 1359-7345            Impact factor:   6.222


  24 in total

1.  Perylene diimides with different side chains are selective in inducing different G-quadruplex DNA structures and in inhibiting telomerase.

Authors:  Luigi Rossetti; Marco Franceschin; Armandodoriano Bianco; Giancarlo Ortaggi; Maria Savino
Journal:  Bioorg Med Chem Lett       Date:  2002-09-16       Impact factor: 2.823

2.  Reaching into the major groove of B-DNA: synthesis and nucleic acid binding of a neomycin-hoechst 33258 conjugate.

Authors:  Dev P Arya; Bert Willis
Journal:  J Am Chem Soc       Date:  2003-10-15       Impact factor: 15.419

3.  Inhibition of telomerase by G-quartet DNA structures.

Authors:  A M Zahler; J R Williamson; T R Cech; D M Prescott
Journal:  Nature       Date:  1991-04-25       Impact factor: 49.962

4.  Selective interactions of perylene derivatives having different side chains with inter- and intramolecular G-quadruplex DNA structures. A correlation with telomerase inhibition.

Authors:  Luigi Rossetti; Marco Franceschin; Stefano Schirripa; Armandodoriano Bianco; Giancarlo Ortaggi; Maria Savino
Journal:  Bioorg Med Chem Lett       Date:  2005-01-17       Impact factor: 2.823

5.  G-quadruplex DNA: a target for drug design.

Authors:  J L Mergny; C Hélène
Journal:  Nat Med       Date:  1998-12       Impact factor: 53.440

6.  Inhibition of human telomerase by a G-quadruplex-interactive compound.

Authors:  D Sun; B Thompson; B E Cathers; M Salazar; S M Kerwin; J O Trent; T C Jenkins; S Neidle; L H Hurley
Journal:  J Med Chem       Date:  1997-07-04       Impact factor: 7.446

7.  A simple, high-resolution method for establishing DNA binding affinity and sequence selectivity.

Authors:  D L Boger; B E Fink; S R Brunette; W C Tse; M P Hedrick
Journal:  J Am Chem Soc       Date:  2001-06-27       Impact factor: 15.419

8.  Pyrene-neomycin conjugate: dual recognition of a DNA triple helix.

Authors:  Liang Xue; I Charles; Dev P Arya
Journal:  Chem Commun (Camb)       Date:  2002-01-07       Impact factor: 6.222

9.  Combining the best in triplex recognition: synthesis and nucleic acid binding of a BQQ-neomycin conjugate.

Authors:  Dev P Arya; Liang Xue; Paul Tennant
Journal:  J Am Chem Soc       Date:  2003-07-09       Impact factor: 15.419

10.  Quantitative visualization of DNA G-quadruplex structures in human cells.

Authors:  Giulia Biffi; David Tannahill; John McCafferty; Shankar Balasubramanian
Journal:  Nat Chem       Date:  2013-01-20       Impact factor: 24.427

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  14 in total

1.  Antimicrobial Activity, AME Resistance, and A-Site Binding Studies of Anthraquinone-Neomycin Conjugates.

Authors:  Natalya N Degtyareva; Changjun Gong; Sandra Story; Nathanael S Levinson; Adegboyega K Oyelere; Keith D Green; Sylvie Garneau-Tsodikova; Dev P Arya
Journal:  ACS Infect Dis       Date:  2017-02-17       Impact factor: 5.084

2.  Recognition of HIV-TAR RNA using neomycin-benzimidazole conjugates.

Authors:  Nihar Ranjan; Sunil Kumar; Derrick Watkins; Deyun Wang; Daniel H Appella; Dev P Arya
Journal:  Bioorg Med Chem Lett       Date:  2013-08-14       Impact factor: 2.823

3.  A review of patents (2011-2015) towards combating resistance to and toxicity of aminoglycosides.

Authors:  Nishad Thamban Chandrika; Sylvie Garneau-Tsodikova
Journal:  Medchemcomm       Date:  2015-11-19       Impact factor: 3.597

Review 4.  Comprehensive review of chemical strategies for the preparation of new aminoglycosides and their biological activities.

Authors:  Nishad Thamban Chandrika; Sylvie Garneau-Tsodikova
Journal:  Chem Soc Rev       Date:  2018-02-19       Impact factor: 54.564

5.  Linker dependent intercalation of bisbenzimidazole-aminosugars in an RNA duplex; selectivity in RNA vs. DNA binding.

Authors:  Nihar Ranjan; Dev P Arya
Journal:  Bioorg Med Chem Lett       Date:  2016-10-27       Impact factor: 2.823

6.  Multivalency in the recognition and antagonism of a HIV TAR RNA-TAT assembly using an aminoglycoside benzimidazole scaffold.

Authors:  Sunil Kumar; Nihar Ranjan; Patrick Kellish; Changjun Gong; Derrick Watkins; Dev P Arya
Journal:  Org Biomol Chem       Date:  2016-02-14       Impact factor: 3.876

7.  An assay for human telomeric G-quadruplex DNA binding drugs.

Authors:  Derrick Watkins; Nihar Ranjan; Sunil Kumar; Changjun Gong; Dev P Arya
Journal:  Bioorg Med Chem Lett       Date:  2013-11-01       Impact factor: 2.823

8.  A pH Sensitive High-Throughput Assay for miRNA Binding of a Peptide-Aminoglycoside (PA) Library.

Authors:  Derrick Watkins; Liuwei Jiang; Smita Nahar; Souvik Maiti; Dev P Arya
Journal:  PLoS One       Date:  2015-12-11       Impact factor: 3.240

9.  A dynamic combinatorial approach for identifying side groups that stabilize DNA-templated supramolecular self-assemblies.

Authors:  Delphine Paolantoni; Sonia Cantel; Pascal Dumy; Sébastien Ulrich
Journal:  Int J Mol Sci       Date:  2015-02-06       Impact factor: 5.923

Review 10.  The Pharmacological Potential of Non-ribosomal Peptides from Marine Sponge and Tunicates.

Authors:  Shivankar Agrawal; Alok Adholeya; Sunil K Deshmukh
Journal:  Front Pharmacol       Date:  2016-10-25       Impact factor: 5.810

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