Literature DB >> 23682758

Broadly applicable methodology for the rapid and dosable small molecule-mediated regulation of transcription factors in human cells.

Matthew D Shoulders1, Lisa M Ryno, Christina B Cooley, Jeffery W Kelly, R Luke Wiseman.   

Abstract

Direct and selective small molecule control of transcription factor activity is an appealing avenue for elucidating the cell biology mediated by transcriptional programs. However, pharmacologic tools to modulate transcription factor activity are scarce because transcription factors are not readily amenable to small molecule-mediated regulation. Moreover, existing genetic approaches to regulate transcription factors often lead to high nonphysiologic levels of transcriptional activation that significantly impair our ability to understand the functional implications of transcription factor activity. Herein, we demonstrate that small molecule-mediated conformational control of protein degradation is a generally applicable, chemical biological methodology to obtain small molecule-regulated transcription factors that modulate transcriptional responses at physiologic levels in human cells. Our establishment of this approach allows for the rapid development of genetically encoded, small molecule-regulated transcription factors to explore the biologic and therapeutic impact of physiologic levels of transcription factor activity in cells.

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Year:  2013        PMID: 23682758      PMCID: PMC3800244          DOI: 10.1021/ja402756p

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  19 in total

1.  Transcriptional up-regulation in cells mediated by a small molecule.

Authors:  Steven P Rowe; Ryan J Casey; Brian B Brennan; Sara J Buhrlage; Anna K Mapp
Journal:  J Am Chem Soc       Date:  2007-08-11       Impact factor: 15.419

2.  Control of transcription factor activity and osteoblast differentiation in mammalian cells using an evolved small-molecule-dependent intein.

Authors:  Courtney M Yuen; Stephen J Rodda; Steven A Vokes; Andrew P McMahon; David R Liu
Journal:  J Am Chem Soc       Date:  2006-07-12       Impact factor: 15.419

Review 3.  Transforming ligands into transcriptional regulators: building blocks for bifunctional molecules.

Authors:  Jonas W Højfeldt; Aaron R Van Dyke; Anna K Mapp
Journal:  Chem Soc Rev       Date:  2011-06-23       Impact factor: 54.564

4.  Therapeutic Targeting of Myc.

Authors:  Edward V Prochownik; Peter K Vogt
Journal:  Genes Cancer       Date:  2010-06

5.  A rapid, reversible, and tunable method to regulate protein function in living cells using synthetic small molecules.

Authors:  Laura A Banaszynski; Ling-Chun Chen; Lystranne A Maynard-Smith; A G Lisa Ooi; Thomas J Wandless
Journal:  Cell       Date:  2006-09-08       Impact factor: 41.582

6.  Directed evolution of a small-molecule-triggered intein with improved splicing properties in mammalian cells.

Authors:  Sun H Peck; Irwin Chen; David R Liu
Journal:  Chem Biol       Date:  2011-05-27

7.  Transcriptional induction of mammalian ER quality control proteins is mediated by single or combined action of ATF6alpha and XBP1.

Authors:  Keisuke Yamamoto; Takashi Sato; Toshie Matsui; Masanori Sato; Tetsuya Okada; Hiderou Yoshida; Akihiro Harada; Kazutoshi Mori
Journal:  Dev Cell       Date:  2007-09       Impact factor: 12.270

8.  Direct inhibition of the NOTCH transcription factor complex.

Authors:  Raymond E Moellering; Melanie Cornejo; Tina N Davis; Cristina Del Bianco; Jon C Aster; Stephen C Blacklow; Andrew L Kung; D Gary Gilliland; Gregory L Verdine; James E Bradner
Journal:  Nature       Date:  2009-11-12       Impact factor: 49.962

9.  Transcriptional activation by tetracyclines in mammalian cells.

Authors:  M Gossen; S Freundlieb; G Bender; G Müller; W Hillen; H Bujard
Journal:  Science       Date:  1995-06-23       Impact factor: 47.728

10.  Small-molecule switches for zinc finger transcription factors.

Authors:  Qing Lin; Carlos F Barbas; Peter G Schultz
Journal:  J Am Chem Soc       Date:  2003-01-22       Impact factor: 15.419

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  26 in total

1.  DNA microstructure influences selective binding of small molecules designed to target mixed-site DNA sequences.

Authors:  Sarah Laughlin-Toth; E Kathleen Carter; Ivaylo Ivanov; W David Wilson
Journal:  Nucleic Acids Res       Date:  2017-02-17       Impact factor: 16.971

2.  The systemic amyloid precursor transthyretin (TTR) behaves as a neuronal stress protein regulated by HSF1 in SH-SY5Y human neuroblastoma cells and APP23 Alzheimer's disease model mice.

Authors:  Xin Wang; Francesca Cattaneo; Lisa Ryno; John Hulleman; Natàlia Reixach; Joel N Buxbaum
Journal:  J Neurosci       Date:  2014-05-21       Impact factor: 6.167

Review 3.  Adapting Secretory Proteostasis and Function Through the Unfolded Protein Response.

Authors:  Madeline Y Wong; Andrew S DiChiara; Patreece H Suen; Kenny Chen; Ngoc-Duc Doan; Matthew D Shoulders
Journal:  Curr Top Microbiol Immunol       Date:  2018       Impact factor: 4.291

4.  HSF1 Activation Can Restrict HIV Replication.

Authors:  Emmanuel E Nekongo; Anna I Ponomarenko; Mahender B Dewal; Vincent L Butty; Edward P Browne; Matthew D Shoulders
Journal:  ACS Infect Dis       Date:  2020-06-10       Impact factor: 5.084

5.  HaloPROTACS: Use of Small Molecule PROTACs to Induce Degradation of HaloTag Fusion Proteins.

Authors:  Dennis L Buckley; Kanak Raina; Nicole Darricarrere; John Hines; Jeffrey L Gustafson; Ian E Smith; Afjal H Miah; John D Harling; Craig M Crews
Journal:  ACS Chem Biol       Date:  2015-06-23       Impact factor: 5.100

Review 6.  A current pharmacologic agent versus the promise of next generation therapeutics to ameliorate protein misfolding and/or aggregation diseases.

Authors:  Aleksandra Baranczak; Jeffery W Kelly
Journal:  Curr Opin Chem Biol       Date:  2016-02-06       Impact factor: 8.822

Review 7.  Chemical Biology Framework to Illuminate Proteostasis.

Authors:  Rebecca M Sebastian; Matthew D Shoulders
Journal:  Annu Rev Biochem       Date:  2020-02-25       Impact factor: 23.643

8.  Multidimensional chemical control of CRISPR-Cas9.

Authors:  Basudeb Maji; Christopher L Moore; Bernd Zetsche; Sara E Volz; Feng Zhang; Matthew D Shoulders; Amit Choudhary
Journal:  Nat Chem Biol       Date:  2016-10-31       Impact factor: 15.040

Review 9.  Targeting protein aggregation for the treatment of degenerative diseases.

Authors:  Yvonne S Eisele; Cecilia Monteiro; Colleen Fearns; Sandra E Encalada; R Luke Wiseman; Evan T Powers; Jeffery W Kelly
Journal:  Nat Rev Drug Discov       Date:  2015-09-04       Impact factor: 84.694

10.  The dTAG system for immediate and target-specific protein degradation.

Authors:  Behnam Nabet; Justin M Roberts; Dennis L Buckley; Joshiawa Paulk; Shiva Dastjerdi; Annan Yang; Alan L Leggett; Michael A Erb; Matthew A Lawlor; Amanda Souza; Thomas G Scott; Sarah Vittori; Jennifer A Perry; Jun Qi; Georg E Winter; Kwok-Kin Wong; Nathanael S Gray; James E Bradner
Journal:  Nat Chem Biol       Date:  2018-03-26       Impact factor: 15.040

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