Literature DB >> 23681121

DrugMap Central: an on-line query and visualization tool to facilitate drug repositioning studies.

Changhe Fu1, Guangxu Jin, Junfeng Gao, Rui Zhu, Efren Ballesteros-Villagrana, Stephen T C Wong.   

Abstract

SUMMARY: Systematic studies of drug repositioning require the integration of multi-level drug data, including basic chemical information (such as SMILES), drug targets, target-related signaling pathways, clinical trial information and Food and Drug Administration (FDA)-approval information, to predict new potential indications of existing drugs. Currently available databases, however, lack query support for multi-level drug information and thus are not designed to support drug repositioning studies. DrugMap Central (DMC), an online tool, is developed to help fill the gap. DMC enables the users to integrate, query, visualize, interrogate, and download multi-level data of known drugs or compounds quickly for drug repositioning studies all within one system. AVAILABILITY: DMC is accessible at http://r2d2drug.org/DMC.aspx. CONTACT: STWong@tmhs.org.

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Year:  2013        PMID: 23681121      PMCID: PMC3702253          DOI: 10.1093/bioinformatics/btt279

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  11 in total

1.  KEGG: kyoto encyclopedia of genes and genomes.

Authors:  M Kanehisa; S Goto
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  PharmGKB: the Pharmacogenetics Knowledge Base.

Authors:  Micheal Hewett; Diane E Oliver; Daniel L Rubin; Katrina L Easton; Joshua M Stuart; Russ B Altman; Teri E Klein
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

3.  TTD: Therapeutic Target Database.

Authors:  X Chen; Z L Ji; Y Z Chen
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

Review 4.  Drug repositioning: identifying and developing new uses for existing drugs.

Authors:  Ted T Ashburn; Karl B Thor
Journal:  Nat Rev Drug Discov       Date:  2004-08       Impact factor: 84.694

5.  Drug effect prediction by polypharmacology-based interaction profiling.

Authors:  Zoltán Simon; Agnes Peragovics; Margit Vigh-Smeller; Gábor Csukly; László Tombor; Zhenhui Yang; Gergely Zahoránszky-Kohalmi; László Végner; Balázs Jelinek; Péter Hári; Csaba Hetényi; István Bitter; Pál Czobor; András Málnási-Csizmadia
Journal:  J Chem Inf Model       Date:  2011-12-09       Impact factor: 4.956

6.  A novel method of transcriptional response analysis to facilitate drug repositioning for cancer therapy.

Authors:  Guangxu Jin; Changhe Fu; Hong Zhao; Kemi Cui; Jenny Chang; Stephen T C Wong
Journal:  Cancer Res       Date:  2011-11-22       Impact factor: 12.701

7.  Discovery and preclinical validation of drug indications using compendia of public gene expression data.

Authors:  Marina Sirota; Joel T Dudley; Jeewon Kim; Annie P Chiang; Alex A Morgan; Alejandro Sweet-Cordero; Julien Sage; Atul J Butte
Journal:  Sci Transl Med       Date:  2011-08-17       Impact factor: 17.956

8.  PROMISCUOUS: a database for network-based drug-repositioning.

Authors:  Joachim von Eichborn; Manuela S Murgueitio; Mathias Dunkel; Soeren Koerner; Philip E Bourne; Robert Preissner
Journal:  Nucleic Acids Res       Date:  2010-11-10       Impact factor: 16.971

9.  DrugBank 3.0: a comprehensive resource for 'omics' research on drugs.

Authors:  Craig Knox; Vivian Law; Timothy Jewison; Philip Liu; Son Ly; Alex Frolkis; Allison Pon; Kelly Banco; Christine Mak; Vanessa Neveu; Yannick Djoumbou; Roman Eisner; An Chi Guo; David S Wishart
Journal:  Nucleic Acids Res       Date:  2010-11-08       Impact factor: 16.971

10.  PID: the Pathway Interaction Database.

Authors:  Carl F Schaefer; Kira Anthony; Shiva Krupa; Jeffrey Buchoff; Matthew Day; Timo Hannay; Kenneth H Buetow
Journal:  Nucleic Acids Res       Date:  2008-10-02       Impact factor: 16.971

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  11 in total

1.  Novel modeling of cancer cell signaling pathways enables systematic drug repositioning for distinct breast cancer metastases.

Authors:  Hong Zhao; Guangxu Jin; Kemi Cui; Ding Ren; Timothy Liu; Peikai Chen; Solomon Wong; Fuhai Li; Yubo Fan; Angel Rodriguez; Jenny Chang; Stephen T C Wong
Journal:  Cancer Res       Date:  2013-10-04       Impact factor: 12.701

Review 2.  Toward better drug repositioning: prioritizing and integrating existing methods into efficient pipelines.

Authors:  Guangxu Jin; Stephen T C Wong
Journal:  Drug Discov Today       Date:  2013-11-14       Impact factor: 7.851

Review 3.  Cellular and molecular processes in ovarian cancer metastasis. A Review in the Theme: Cell and Molecular Processes in Cancer Metastasis.

Authors:  Tsz-Lun Yeung; Cecilia S Leung; Kay-Pong Yip; Chi Lam Au Yeung; Stephen T C Wong; Samuel C Mok
Journal:  Am J Physiol Cell Physiol       Date:  2015-07-29       Impact factor: 4.249

Review 4.  Systems Medicine: The Application of Systems Biology Approaches for Modern Medical Research and Drug Development.

Authors:  Duncan Ayers; Philip J Day
Journal:  Mol Biol Int       Date:  2015-08-18

5.  Drug2Gene: an exhaustive resource to explore effectively the drug-target relation network.

Authors:  Helge G Roider; Nadia Pavlova; Ivaylo Kirov; Stoyan Slavov; Todor Slavov; Zlatyo Uzunov; Bertram Weiss
Journal:  BMC Bioinformatics       Date:  2014-03-11       Impact factor: 3.169

Review 6.  Review of Drug Repositioning Approaches and Resources.

Authors:  Hanqing Xue; Jie Li; Haozhe Xie; Yadong Wang
Journal:  Int J Biol Sci       Date:  2018-07-13       Impact factor: 6.580

7.  Repurposing Zileuton as a Depression Drug Using an AI and In Vitro Approach.

Authors:  Norwin Kubick; Marta Pajares; Ioana Enache; Gina Manda; Michel-Edwar Mickael
Journal:  Molecules       Date:  2020-05-05       Impact factor: 4.411

Review 8.  Exploring the new horizons of drug repurposing: A vital tool for turning hard work into smart work.

Authors:  Rajesh Kumar; Seetha Harilal; Sheeba Varghese Gupta; Jobin Jose; Della Grace Thomas Parambi; Md Sahab Uddin; Muhammad Ajmal Shah; Bijo Mathew
Journal:  Eur J Med Chem       Date:  2019-08-08       Impact factor: 6.514

9.  Proceedings of the 12th Annual UT-ORNL-KBRIN Bioinformatics Summit 2013.

Authors:  Eric C Rouchka; Robert M Flight
Journal:  BMC Bioinformatics       Date:  2013-03-22       Impact factor: 3.169

10.  'RE:fine drugs': an interactive dashboard to access drug repurposing opportunities.

Authors:  Soheil Moosavinasab; Jeremy Patterson; Robert Strouse; Majid Rastegar-Mojarad; Kelly Regan; Philip R O Payne; Yungui Huang; Simon M Lin
Journal:  Database (Oxford)       Date:  2016-05-17       Impact factor: 3.451

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