Literature DB >> 23680132

Development of a genomic DNA reference material panel for myotonic dystrophy type 1 (DM1) genetic testing.

Lisa Kalman1, Jack Tarleton, Monica Hitch, Madhuri Hegde, Nick Hjelm, Elizabeth Berry-Kravis, Lili Zhou, James E Hilbert, Elizabeth A Luebbe, Richard T Moxley, Lorraine Toji.   

Abstract

Myotonic dystrophy type 1 (DM1) is caused by expansion of a CTG triplet repeat in the 3' untranslated region of the DMPK gene that encodes a serine-threonine kinase. Patients with larger repeats tend to have a more severe phenotype. Clinical laboratories require reference and quality control materials for DM1 diagnostic and carrier genetic testing. Well-characterized reference materials are not available. To address this need, the Centers for Disease Control and Prevention-based Genetic Testing Reference Material Coordination Program, in collaboration with members of the genetic testing community, the National Registry of Myotonic Dystrophy and Facioscapulohumeral Muscular Dystrophy Patients and Family Members, and the Coriell Cell Repositories, has established and characterized cell lines from patients with DM1 to create a reference material panel. The CTG repeats in genomic DNA samples from 10 DM1 cell lines were characterized in three clinical genetic testing laboratories using PCR and Southern blot analysis. DMPK alleles in the samples cover four of five DM1 clinical categories: normal (5 to 34 repeats), mild (50 to 100 repeats), classical (101 to 1000 repeats), and congenital (>1000 repeats). We did not identify or establish Coriell cell lines in the premutation range (35 to 49 repeats). These samples are publicly available for quality control, proficiency testing, test development, and research and should help improve the accuracy of DM1 testing.
Copyright © 2013 American Society for Investigative Pathology. Published by Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23680132      PMCID: PMC3699699          DOI: 10.1016/j.jmoldx.2013.03.008

Source DB:  PubMed          Journal:  J Mol Diagn        ISSN: 1525-1578            Impact factor:   5.568


  21 in total

1.  If you build a rare disease registry, will they enroll and will they use it? Methods and data from the National Registry of Myotonic Dystrophy (DM) and Facioscapulohumeral Muscular Dystrophy (FSHD).

Authors:  James E Hilbert; John T Kissel; Elizabeth A Luebbe; William B Martens; Michael P McDermott; Donald B Sanders; Rabi Tawil; Charles A Thornton; Richard T Moxley
Journal:  Contemp Clin Trials       Date:  2011-11-26       Impact factor: 2.226

2.  Myotonic dystrophy mutation: an unstable CTG repeat in the 3' untranslated region of the gene.

Authors:  M Mahadevan; C Tsilfidis; L Sabourin; G Shutler; C Amemiya; G Jansen; C Neville; M Narang; J Barceló; K O'Hoy
Journal:  Science       Date:  1992-03-06       Impact factor: 47.728

3.  An unstable triplet repeat in a gene related to myotonic muscular dystrophy.

Authors:  Y H Fu; A Pizzuti; R G Fenwick; J King; S Rajnarayan; P W Dunne; J Dubel; G A Nasser; T Ashizawa; P de Jong
Journal:  Science       Date:  1992-03-06       Impact factor: 47.728

Review 4.  The myotonic dystrophy gene.

Authors:  A Pizzuti; D L Friedman; C T Caskey
Journal:  Arch Neurol       Date:  1993-11

5.  Somatic instability of CTG repeat in myotonic dystrophy.

Authors:  T Ashizawa; J R Dubel; Y Harati
Journal:  Neurology       Date:  1993-12       Impact factor: 9.910

6.  Expansion of an unstable DNA region and phenotypic variation in myotonic dystrophy.

Authors:  H G Harley; J D Brook; S A Rundle; S Crow; W Reardon; A J Buckler; P S Harper; D E Housman; D J Shaw
Journal:  Nature       Date:  1992-02-06       Impact factor: 49.962

7.  Detection of an unstable fragment of DNA specific to individuals with myotonic dystrophy.

Authors:  J Buxton; P Shelbourne; J Davies; C Jones; T Van Tongeren; C Aslanidis; P de Jong; G Jansen; M Anvret; B Riley
Journal:  Nature       Date:  1992-02-06       Impact factor: 49.962

8.  Correlation between CTG trinucleotide repeat length and frequency of severe congenital myotonic dystrophy.

Authors:  C Tsilfidis; A E MacKenzie; G Mettler; J Barceló; R G Korneluk
Journal:  Nat Genet       Date:  1992-06       Impact factor: 38.330

9.  Myotonic dystrophy patients have larger CTG expansions in skeletal muscle than in leukocytes.

Authors:  C A Thornton; K Johnson; R T Moxley
Journal:  Ann Neurol       Date:  1994-01       Impact factor: 10.422

10.  Larger expansions of the CTG repeat in muscle compared to lymphocytes from patients with myotonic dystrophy.

Authors:  M Anvret; G Ahlberg; U Grandell; B Hedberg; K Johnson; L Edström
Journal:  Hum Mol Genet       Date:  1993-09       Impact factor: 6.150

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  5 in total

Review 1.  Reference standards for next-generation sequencing.

Authors:  Simon A Hardwick; Ira W Deveson; Tim R Mercer
Journal:  Nat Rev Genet       Date:  2017-06-19       Impact factor: 53.242

2.  Robust and accurate detection and sizing of repeats within the DMPK gene using a novel TP-PCR test.

Authors:  Maike Leferink; Daphne P W Wong; Shiwei Cai; Minli Yeo; Jocelin Ho; Mulias Lian; Erik-Jan Kamsteeg; Samuel S Chong; Lonneke Haer-Wigman; Ming Guan
Journal:  Sci Rep       Date:  2019-06-04       Impact factor: 4.379

3.  µLAS: Sizing of expanded trinucleotide repeats with femtomolar sensitivity in less than 5 minutes.

Authors:  Rémi Malbec; Bayan Chami; Lorène Aeschbach; Gustavo A Ruiz Buendía; Marius Socol; Pierre Joseph; Thierry Leïchlé; Evgeniya Trofimenko; Aurélien Bancaud; Vincent Dion
Journal:  Sci Rep       Date:  2019-01-10       Impact factor: 4.379

Review 4.  Development and Characterization of Reference Materials for Genetic Testing: Focus on Public Partnerships.

Authors:  Lisa V Kalman; Vivekananda Datta; Mickey Williams; Justin M Zook; Marc L Salit; Jin Yeong Han
Journal:  Ann Lab Med       Date:  2016-11       Impact factor: 3.464

5.  In Vitro Fertilization Using Preimplantation Genetic Testing in a Romanian Couple Carrier of Mutations in the TTN Gene: A Case Report and Literature Review.

Authors:  Bogdan Doroftei; Radu Maftei; Ovidiu-Dumitru Ilie; Theodora Armeanu; Maria Puiu; Iuliu Ivanov; Loredana Nemtanu
Journal:  Diagnostics (Basel)       Date:  2021-12-10
  5 in total

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