Literature DB >> 28626224

Reference standards for next-generation sequencing.

Simon A Hardwick1,2, Ira W Deveson1,3, Tim R Mercer1,2,4.   

Abstract

Next-generation sequencing (NGS) provides a broad investigation of the genome, and it is being readily applied for the diagnosis of disease-associated genetic features. However, the interpretation of NGS data remains challenging owing to the size and complexity of the genome and the technical errors that are introduced during sample preparation, sequencing and analysis. These errors can be understood and mitigated through the use of reference standards - well-characterized genetic materials or synthetic spike-in controls that help to calibrate NGS measurements and to evaluate diagnostic performance. The informed use of reference standards, and associated statistical principles, ensures rigorous analysis of NGS data and is essential for its future clinical use.

Mesh:

Year:  2017        PMID: 28626224     DOI: 10.1038/nrg.2017.44

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  115 in total

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Review 5.  Assuring the Quality of Next-Generation Sequencing in Clinical Microbiology and Public Health Laboratories.

Authors:  Amy S Gargis; Lisa Kalman; Ira M Lubin
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6.  What is a standard?

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8.  A comprehensive catalogue of somatic mutations from a human cancer genome.

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  69 in total

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Journal:  J Immunother Cancer       Date:  2020-12       Impact factor: 13.751

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4.  How Can Law and Policy Advance Quality in Genomic Analysis and Interpretation for Clinical Care?

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Review 5.  The Future of Environmental DNA in Forensic Science.

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Journal:  Appl Environ Microbiol       Date:  2020-01-07       Impact factor: 4.792

6.  Use of Spiked Normalizers to More Precisely Quantify Tumor Markers and Viral Genomes by Massive Parallel Sequencing of Plasma DNA.

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7.  Five Novel Oncogenic Signatures Could Be Utilized as AFP-Related Diagnostic Biomarkers for Hepatocellular Carcinoma Based on Next-Generation Sequencing.

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Review 8.  Clinical Metagenomic Next-Generation Sequencing for Pathogen Detection.

Authors:  Wei Gu; Steve Miller; Charles Y Chiu
Journal:  Annu Rev Pathol       Date:  2018-10-24       Impact factor: 23.472

9.  Review of applications of high-throughput sequencing in personalized medicine: barriers and facilitators of future progress in research and clinical application.

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10.  Consistent and correctable bias in metagenomic sequencing experiments.

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