Literature DB >> 23673969

Origins and implications of pluripotent stem cell variability and heterogeneity.

Patrick Cahan1, George Q Daley.   

Abstract

Pluripotent stem cells constitute a platform to model disease and developmental processes and can potentially be used in regenerative medicine. However, not all pluripotent cell lines are equal in their capacity to differentiate into desired cell types in vitro. Genetic and epigenetic variations contribute to functional variability between cell lines and heterogeneity within clones. These genetic and epigenetic variations could 'lock' the pluripotency network resulting in residual pluripotent cells or alter the signalling response of developmental pathways leading to lineage bias. The molecular contributors to functional variability and heterogeneity in both embryonic stem (ES) cells and induced pluripotent stem (iPS) cells are only beginning to emerge, yet they are crucial to the future of the stem cell field.

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Year:  2013        PMID: 23673969      PMCID: PMC3980962          DOI: 10.1038/nrm3584

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  116 in total

1.  Nanog safeguards pluripotency and mediates germline development.

Authors:  Ian Chambers; Jose Silva; Douglas Colby; Jennifer Nichols; Bianca Nijmeijer; Morag Robertson; Jan Vrana; Ken Jones; Lars Grotewold; Austin Smith
Journal:  Nature       Date:  2007-12-20       Impact factor: 49.962

2.  Marked differences in differentiation propensity among human embryonic stem cell lines.

Authors:  Kenji Osafune; Leslie Caron; Malgorzata Borowiak; Rita J Martinez; Claire S Fitz-Gerald; Yasunori Sato; Chad A Cowan; Kenneth R Chien; Douglas A Melton
Journal:  Nat Biotechnol       Date:  2008-02-17       Impact factor: 54.908

3.  Directly reprogrammed fibroblasts show global epigenetic remodeling and widespread tissue contribution.

Authors:  Nimet Maherali; Rupa Sridharan; Wei Xie; Jochen Utikal; Sarah Eminli; Katrin Arnold; Matthias Stadtfeld; Robin Yachechko; Jason Tchieu; Rudolf Jaenisch; Kathrin Plath; Konrad Hochedlinger
Journal:  Cell Stem Cell       Date:  2007-06-07       Impact factor: 24.633

4.  Reprogramming of human somatic cells to pluripotency with defined factors.

Authors:  In-Hyun Park; Rui Zhao; Jason A West; Akiko Yabuuchi; Hongguang Huo; Tan A Ince; Paul H Lerou; M William Lensch; George Q Daley
Journal:  Nature       Date:  2007-12-23       Impact factor: 49.962

5.  Induction of pluripotent stem cells from adult human fibroblasts by defined factors.

Authors:  Kazutoshi Takahashi; Koji Tanabe; Mari Ohnuki; Megumi Narita; Tomoko Ichisaka; Kiichiro Tomoda; Shinya Yamanaka
Journal:  Cell       Date:  2007-11-30       Impact factor: 41.582

6.  MicroRNAs control de novo DNA methylation through regulation of transcriptional repressors in mouse embryonic stem cells.

Authors:  Lasse Sinkkonen; Tabea Hugenschmidt; Philipp Berninger; Dimos Gaidatzis; Fabio Mohn; Caroline G Artus-Revel; Mihaela Zavolan; Petr Svoboda; Witold Filipowicz
Journal:  Nat Struct Mol Biol       Date:  2008-03-02       Impact factor: 15.369

7.  Identification and characterization of subpopulations in undifferentiated ES cell culture.

Authors:  Yayoi Toyooka; Daisuke Shimosato; Kazuhiro Murakami; Kadue Takahashi; Hitoshi Niwa
Journal:  Development       Date:  2008-03       Impact factor: 6.868

8.  Genome-wide maps of chromatin state in pluripotent and lineage-committed cells.

Authors:  Tarjei S Mikkelsen; Manching Ku; David B Jaffe; Biju Issac; Erez Lieberman; Georgia Giannoukos; Pablo Alvarez; William Brockman; Tae-Kyung Kim; Richard P Koche; William Lee; Eric Mendenhall; Aisling O'Donovan; Aviva Presser; Carsten Russ; Xiaohui Xie; Alexander Meissner; Marius Wernig; Rudolf Jaenisch; Chad Nusbaum; Eric S Lander; Bradley E Bernstein
Journal:  Nature       Date:  2007-07-01       Impact factor: 49.962

9.  An extended transcriptional network for pluripotency of embryonic stem cells.

Authors:  Jonghwan Kim; Jianlin Chu; Xiaohua Shen; Jianlong Wang; Stuart H Orkin
Journal:  Cell       Date:  2008-03-21       Impact factor: 41.582

10.  FGF stimulation of the Erk1/2 signalling cascade triggers transition of pluripotent embryonic stem cells from self-renewal to lineage commitment.

Authors:  Tilo Kunath; Marc K Saba-El-Leil; Marwa Almousailleakh; Jason Wray; Sylvain Meloche; Austin Smith
Journal:  Development       Date:  2007-08       Impact factor: 6.868

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  126 in total

Review 1.  Stem cells and the evolving notion of cellular identity.

Authors:  George Q Daley
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-10-19       Impact factor: 6.237

2.  A metric and workflow for quality control in the analysis of heterogeneity in phenotypic profiles and screens.

Authors:  Albert Gough; Tong Ying Shun; D Lansing Taylor; Mark Schurdak
Journal:  Methods       Date:  2015-11-04       Impact factor: 3.608

3.  Automated, high-throughput derivation, characterization and differentiation of induced pluripotent stem cells.

Authors:  Daniel Paull; Ana Sevilla; Hongyan Zhou; Aana Kim Hahn; Hesed Kim; Christopher Napolitano; Alexander Tsankov; Linshan Shang; Katie Krumholz; Premlatha Jagadeesan; Chris M Woodard; Bruce Sun; Thierry Vilboux; Matthew Zimmer; Eliana Forero; Dorota N Moroziewicz; Hector Martinez; May Christine V Malicdan; Keren A Weiss; Lauren B Vensand; Carmen R Dusenberry; Hannah Polus; Karla Therese L Sy; David J Kahler; William A Gahl; Susan L Solomon; Stephen Chang; Alexander Meissner; Kevin Eggan; Scott A Noggle
Journal:  Nat Methods       Date:  2015-08-03       Impact factor: 28.547

4.  Early embryonic-like cells are induced by downregulating replication-dependent chromatin assembly.

Authors:  Takashi Ishiuchi; Rocio Enriquez-Gasca; Eiji Mizutani; Ana Bošković; Celine Ziegler-Birling; Diego Rodriguez-Terrones; Teruhiko Wakayama; Juan M Vaquerizas; Maria-Elena Torres-Padilla
Journal:  Nat Struct Mol Biol       Date:  2015-08-03       Impact factor: 15.369

5.  Natural underlying mtDNA heteroplasmy as a potential source of intra-person hiPSC variability.

Authors:  Ester Perales-Clemente; Alexandra N Cook; Jared M Evans; Samantha Roellinger; Frank Secreto; Valentina Emmanuele; Devin Oglesbee; Vamsi K Mootha; Michio Hirano; Eric A Schon; Andre Terzic; Timothy J Nelson
Journal:  EMBO J       Date:  2016-07-19       Impact factor: 11.598

Review 6.  Manufacturing Cell Therapies Using Engineered Biomaterials.

Authors:  Amr A Abdeen; Krishanu Saha
Journal:  Trends Biotechnol       Date:  2017-07-12       Impact factor: 19.536

7.  A new route to human embryonic stem cells.

Authors:  Alan Trounson; George Q Daley; Vincent Pasque; Kathrin Plath
Journal:  Nat Med       Date:  2013-07       Impact factor: 53.440

8.  The implementation of novel collaborative structures for the identification and resolution of barriers to pluripotent stem cell translation.

Authors:  David A Brindley; Anna French; Jane Suh; MacKenna Roberts; Benjamin Davies; Rafael Pinedo-Villanueva; Karolina Wartolowska; Kelly Rooke; Anneke Kramm; Andrew Judge; Mark Morrey; Amit Chandra; Hannah Hurley; Liam Grover; Ian Bingham; Bernard Siegel; Matt S Rattley; R Lee Buckler; David McKeon; Katie Krumholz; Lilian Hook; Michael May; Sarah Rikabi; Rosie Pigott; Megan Morys; Afsie Sabokbar; Emily Titus; Yacine Laabi; Gilles Lemaitre; Raymond Zahkia; Doug Sipp; Robert Horne; Christopher Bravery; David Williams; Ivan Wall; Evan Y Snyder; Jeffrey M Karp; Richard W Barker; Kim Bure; Andrew J Carr; Brock Reeve
Journal:  Stem Cells Dev       Date:  2013-12       Impact factor: 3.272

9.  Transcriptional Regulation of the First Cell Fate Decision.

Authors:  Catherine Rhee; Jonghwan Kim; Haley O Tucker
Journal:  J Dev Biol Regen Med       Date:  2017-10-26

10.  Engineering cells with intracellular agent-loaded microparticles to control cell phenotype.

Authors:  James A Ankrum; Oscar R Miranda; Kelvin S Ng; Debanjan Sarkar; Chenjie Xu; Jeffrey M Karp
Journal:  Nat Protoc       Date:  2014-01-09       Impact factor: 13.491

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