Literature DB >> 23665802

Mechanistic validation.

Thomas Hartung1, Sebastian Hoffmann, Martin Stephens.   

Abstract

Validation of new approaches in regulatory toxicology is commonly defined as the independent assessment of the reproducibility and relevance (the scientific basis and predictive capacity) of a test for a particular purpose. In large ring trials, the emphasis to date has been mainly on reproducibility and predictive capacity (comparison to the traditional test) with less attention given to the scientific or mechanistic basis. Assessing predictive capacity is difficult for novel approaches (which are based on mechanism), such as pathways of toxicity or the complex networks within the organism (systems toxicology). This is highly relevant for implementing Toxicology for the 21st Century, either by high-throughput testing in the ToxCast/Tox21 project or omics-based testing in the Human Toxome Project. This article explores the mostly neglected assessment of a test's scientific basis, which moves mechanism and causality to the foreground when validating/qualifying tests. Such mechanistic validation faces the problem of establishing causality in complex systems. However, pragmatic adaptations of the Bradford Hill criteria, as well as bioinformatic tools, are emerging. As critical infrastructures of the organism are perturbed by a toxic mechanism we argue that by focusing on the target of toxicity and its vulnerability, in addition to the way it is perturbed, we can anchor the identification of the mechanism and its verification.

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Year:  2013        PMID: 23665802      PMCID: PMC4086802          DOI: 10.14573/altex.2013.2.119

Source DB:  PubMed          Journal:  ALTEX        ISSN: 1868-596X            Impact factor:   6.043


  45 in total

1.  Three Rs potential in the development and quality control of pharmaceuticals.

Authors:  T Hartung
Journal:  ALTEX       Date:  2001       Impact factor: 6.043

2.  Food for thought ... on alternative methods for nanoparticle safety testing.

Authors:  Thomas Hartung
Journal:  ALTEX       Date:  2010       Impact factor: 6.043

3.  Biomarker qualification pilot process at the US Food and Drug Administration.

Authors:  Federico Goodsaid; Felix Frueh
Journal:  AAPS J       Date:  2007-03-23       Impact factor: 4.009

4.  Points of reference in the validation process: the report and recommendations of ECVAM Workshop 66.

Authors:  Sebastian Hoffmann; Lutz Edler; Ian Gardner; Laura Gribaldo; Thomas Hartung; Christoph Klein; Manfred Liebsch; Stefan Sauerland; Leonard Schechtman; Annalaura Stammati; Efstathios Nikolaidis
Journal:  Altern Lab Anim       Date:  2008-07       Impact factor: 1.303

5.  Food for thought ... On food safety testing.

Authors:  Thomas Hartung; Herman Koeter
Journal:  ALTEX       Date:  2008       Impact factor: 6.043

6.  Food for thought... on animal tests.

Authors:  Thomas Hartung
Journal:  ALTEX       Date:  2008       Impact factor: 6.043

7.  Food for thought ... on in silico methods in toxicology.

Authors:  Thomas Hartung; Sebastian Hoffmann
Journal:  ALTEX       Date:  2009       Impact factor: 6.043

8.  Perspectives on validation of high-throughput assays supporting 21st century toxicity testing.

Authors:  Richard Judson; Robert Kavlock; Matthew Martin; David Reif; Keith Houck; Thomas Knudsen; Ann Richard; Raymond R Tice; Maurice Whelan; Menghang Xia; Ruili Huang; Christopher Austin; George Daston; Thomas Hartung; John R Fowle; William Wooge; Weida Tong; David Dix
Journal:  ALTEX       Date:  2013       Impact factor: 6.043

Review 9.  Predictive models and computational toxicology.

Authors:  Thomas Knudsen; Matthew Martin; Kelly Chandler; Nicole Kleinstreuer; Richard Judson; Nisha Sipes
Journal:  Methods Mol Biol       Date:  2013

10.  15 years out: reinventing ICCVAM.

Authors:  Linda S Birnbaum
Journal:  Environ Health Perspect       Date:  2013-02       Impact factor: 9.031

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  26 in total

Review 1.  Developmental neurotoxicity - challenges in the 21st century and in vitro opportunities.

Authors:  Lena Smirnova; Helena T Hogberg; Marcel Leist; Thomas Hartung
Journal:  ALTEX       Date:  2014       Impact factor: 6.043

2.  Pathways of Toxicity.

Authors:  Andre Kleensang; Alexandra Maertens; Michael Rosenberg; Suzanne Fitzpatrick; Justin Lamb; Scott Auerbach; Richard Brennan; Kevin M Crofton; Ben Gordon; Albert J Fornace; Kevin Gaido; David Gerhold; Robin Haw; Adriano Henney; Avi Ma'ayan; Mary McBride; Stefano Monti; Michael F Ochs; Akhilesh Pandey; Roded Sharan; Rob Stierum; Stuart Tugendreich; Catherine Willett; Clemens Wittwehr; Jianguo Xia; Geoffrey W Patton; Kirk Arvidson; Mounir Bouhifd; Helena T Hogberg; Thomas Luechtefeld; Lena Smirnova; Liang Zhao; Yeyejide Adeleye; Minoru Kanehisa; Paul Carmichael; Melvin E Andersen; Thomas Hartung
Journal:  ALTEX       Date:  2013-10-15       Impact factor: 6.043

Review 3.  From the exposome to mechanistic understanding of chemical-induced adverse effects.

Authors:  Beate I Escher; Jörg Hackermüller; Tobias Polte; Stefan Scholz; Achim Aigner; Rolf Altenburger; Alexander Böhme; Stephanie K Bopp; Werner Brack; Wibke Busch; Marc Chadeau-Hyam; Adrian Covaci; Adolf Eisenträger; James J Galligan; Natalia Garcia-Reyero; Thomas Hartung; Michaela Hein; Gunda Herberth; Annika Jahnke; Jos Kleinjans; Nils Klüver; Martin Krauss; Marja Lamoree; Irina Lehmann; Till Luckenbach; Gary W Miller; Andrea Müller; David H Phillips; Thorsten Reemtsma; Ulrike Rolle-Kampczyk; Gerrit Schüürmann; Benno Schwikowski; Yu-Mei Tan; Saskia Trump; Susanne Walter-Rohde; John F Wambaugh
Journal:  Environ Int       Date:  2016-12-08       Impact factor: 9.621

Review 4.  Big-data and machine learning to revamp computational toxicology and its use in risk assessment.

Authors:  Thomas Luechtefeld; Craig Rowlands; Thomas Hartung
Journal:  Toxicol Res (Camb)       Date:  2018-05-01       Impact factor: 3.524

Review 5.  Biology-inspired microphysiological system approaches to solve the prediction dilemma of substance testing.

Authors:  Uwe Marx; Tommy B Andersson; Anthony Bahinski; Mario Beilmann; Sonja Beken; Flemming R Cassee; Murat Cirit; Mardas Daneshian; Susan Fitzpatrick; Olivier Frey; Claudia Gaertner; Christoph Giese; Linda Griffith; Thomas Hartung; Minne B Heringa; Julia Hoeng; Wim H de Jong; Hajime Kojima; Jochen Kuehnl; Marcel Leist; Andreas Luch; Ilka Maschmeyer; Dmitry Sakharov; Adrienne J A M Sips; Thomas Steger-Hartmann; Danilo A Tagle; Alexander Tonevitsky; Tewes Tralau; Sergej Tsyb; Anja van de Stolpe; Rob Vandebriel; Paul Vulto; Jufeng Wang; Joachim Wiest; Marleen Rodenburg; Adrian Roth
Journal:  ALTEX       Date:  2016-05-15       Impact factor: 6.043

6.  21st Century Cell Culture for 21st Century Toxicology.

Authors:  David Pamies; Thomas Hartung
Journal:  Chem Res Toxicol       Date:  2016-12-05       Impact factor: 3.739

Review 7.  Biological and medical applications of a brain-on-a-chip.

Authors:  David Pamies; Thomas Hartung; Helena T Hogberg
Journal:  Exp Biol Med (Maywood)       Date:  2014-06-09

8.  Biology-inspired microphysiological systems to advance patient benefit and animal welfare in drug development

Authors:  Uwe Marx; Takafumi Akabane; Tommy B Andersson; Elizabeth Baker; Mario Beilmann; Sonja Beken; Susanne Brendler-Schwaab; Murat Cirit; Rhiannon David; Eva-Maria Dehne; Isabell Durieux; Lorna Ewart; Suzanne C Fitzpatrick; Olivier Frey; Florian Fuchs; Linda G Griffith; Geraldine A Hamilton; Thomas Hartung; Julia Hoeng; Helena Hogberg; David J Hughes; Donald E Ingber; Anita Iskandar; Toshiyuki Kanamori; Hajime Kojima; Jochen Kuehnl; Marcel Leist; Bo Li; Peter Loskill; Donna L Mendrick; Thomas Neumann; Giorgia Pallocca; Ivan Rusyn; Lena Smirnova; Thomas Steger-Hartmann; Danilo A Tagle; Alexander Tonevitsky; Sergej Tsyb; Martin Trapecar; Bob Van de Water; Janny Van den Eijnden-van Raaij; Paul Vulto; Kengo Watanabe; Armin Wolf; Xiaobing Zhou; Adrian Roth
Journal:  ALTEX       Date:  2020-02-28       Impact factor: 6.043

9.  Building shared experience to advance practical application of pathway-based toxicology: liver toxicity mode-of-action.

Authors:  Catherine Willett; Jessica Caverly Rae; Katy O Goyak; Gary Minsavage; Carl Westmoreland; Melvin Andersen; Mark Avigan; Daniel Duché; Georgina Harris; Thomas Hartung; Hartmut Jaeschke; Andre Kleensang; Brigitte Landesmann; Suzanne Martos; Marilyn Matevia; Colleen Toole; Andrew Rowan; Terry Schultz; Jennifer Seed; John Senior; Imran Shah; Kalyanasundaram Subramanian; Mathieu Vinken; Paul Watkins
Journal:  ALTEX       Date:  2014-01-28       Impact factor: 6.043

Review 10.  Perspectives on In Vitro to In Vivo Extrapolations.

Authors:  Thomas Hartung
Journal:  Appl In Vitro Toxicol       Date:  2018-12-08
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