Literature DB >> 23653696

"Shovel-ready" Sequences as a Stimulus for the Next Generation of Life Scientists.

Michael D Boyle1.   

Abstract

Genomics and bioinformatics are dynamic fields well-suited for capturing the imagination of undergraduates in both research laboratories and classrooms. Currently, raw nucleotide sequence is being provided, as part of several genomics research initiatives, for undergraduate research and teaching. These initiatives could be easily extended and much more effective if the source of the sequenced material and the subsequent focus of the data analysis were aligned with the research interests of individual faculty at undergraduate institutions. By judicious use of surplus capacity in existing nucleotide sequencing cores, raw sequence data could be generated to support ongoing research efforts involving undergraduates. This would allow these students to participate actively in discovery research, with a goal of making novel contributions to their field through original research while nurturing the next generation of talented research scientists.

Year:  2010        PMID: 23653696      PMCID: PMC3577241          DOI: 10.1128/jmbe.v11.i1.133

Source DB:  PubMed          Journal:  J Microbiol Biol Educ        ISSN: 1935-7877


  12 in total

1.  Genome Consortium for Active Teaching: meeting the goals of BIO2010.

Authors:  A Malcolm Campbell; Mary Lee S Ledbetter; Laura L M Hoopes; Todd T Eckdahl; Laurie J Heyer; Anne Rosenwald; Edison Fowlks; Scott Tonidandel; Brooke Bucholtz; Gail Gottfried
Journal:  CBE Life Sci Educ       Date:  2007       Impact factor: 3.325

2.  The pipeline. Benefits of undergraduate research experiences.

Authors:  Susan H Russell; Mary P Hancock; James McCullough
Journal:  Science       Date:  2007-04-27       Impact factor: 47.728

3.  Professional development. Summer institute to improve university science teaching.

Authors:  Christine Pfund; Sarah Miller; Kerry Brenner; Peter Bruns; Amy Chang; Diane Ebert-May; Adam P Fagen; Jim Gentile; Sandra Gossens; Ishrat M Khan; Jay B Labov; Christine Maidl Pribbenow; Millard Susman; Lillian Tong; Robin Wright; Robert T Yuan; William B Wood; Jo Handelsman
Journal:  Science       Date:  2009-04-24       Impact factor: 47.728

4.  It's difficult to change the way we teach: lessons from the Integrative Themes in Physiology curriculum module project.

Authors:  Dee U Silverthorn; Patti M Thorn; Marilla D Svinicki
Journal:  Adv Physiol Educ       Date:  2006-12       Impact factor: 2.288

5.  A strategy for constructing aneuploid yeast strains by transient nondisjunction of a target chromosome.

Authors:  Kirk R Anders; Julie R Kudrna; Kirstie E Keller; BreAnna Kinghorn; Elizabeth M Miller; Daniel Pauw; Anders T Peck; Christopher E Shellooe; Isaac J T Strong
Journal:  BMC Genet       Date:  2009-07-13       Impact factor: 2.797

6.  Genome sequences of three agrobacterium biovars help elucidate the evolution of multichromosome genomes in bacteria.

Authors:  Steven C Slater; Barry S Goldman; Brad Goodner; João C Setubal; Stephen K Farrand; Eugene W Nester; Thomas J Burr; Lois Banta; Allan W Dickerman; Ian Paulsen; Leon Otten; Garret Suen; Roy Welch; Nalvo F Almeida; Frank Arnold; Oliver T Burton; Zijin Du; Adam Ewing; Eric Godsy; Sara Heisel; Kathryn L Houmiel; Jinal Jhaveri; Jing Lu; Nancy M Miller; Stacie Norton; Qiang Chen; Waranyoo Phoolcharoen; Victoria Ohlin; Dan Ondrusek; Nicole Pride; Shawn L Stricklin; Jian Sun; Cathy Wheeler; Lindsey Wilson; Huijun Zhu; Derek W Wood
Journal:  J Bacteriol       Date:  2009-02-27       Impact factor: 3.490

7.  Undergraduate research experiences support science career decisions and active learning.

Authors:  David Lopatto
Journal:  CBE Life Sci Educ       Date:  2007       Impact factor: 3.325

8.  Comparison of dot chromosome sequences from D. melanogaster and D. virilis reveals an enrichment of DNA transposon sequences in heterochromatic domains.

Authors:  Elizabeth E Slawson; Christopher D Shaffer; Colin D Malone; Wilson Leung; Elmer Kellmann; Rachel B Shevchek; Carolyn A Craig; Seth M Bloom; James Bogenpohl; James Dee; Emiko T A Morimoto; Jenny Myoung; Andrew S Nett; Fatih Ozsolak; Mindy E Tittiger; Andrea Zeug; Mary-Lou Pardue; Jeremy Buhler; Elaine R Mardis; Sarah C R Elgin
Journal:  Genome Biol       Date:  2006-02-20       Impact factor: 13.583

9.  Discovery-based science education: functional genomic dissection in Drosophila by undergraduate researchers.

Authors:  Jiong Chen; Gerald B Call; Elsa Beyer; Chris Bui; Albert Cespedes; Amy Chan; Jenny Chan; Stacy Chan; Akanksha Chhabra; Peter Dang; Artemis Deravanesian; Brenda Hermogeno; James Jen; Eunha Kim; Eric Lee; Gemma Lewis; Jamie Marshall; Kirsten Regalia; Farnaz Shadpour; Aram Shemmassian; Kristin Spivey; Maggie Wells; Joy Wu; Yuki Yamauchi; Amir Yavari; Anna Abrams; Amanda Abramson; Latiffe Amado; Jenny Anderson; Keenan Bashour; Elena Bibikova; Allen Bookatz; Sarah Brewer; Natalie Buu; Stephanie Calvillo; Joseph Cao; Aileen Chang; Daniel Chang; Yuli Chang; Yibing Chen; Joo Choi; Jeyling Chou; Sumit Datta; Ardy Davarifar; Poonam Desai; Jordan Fabrikant; Shahbaz Farnad; Katherine Fu; Eddie Garcia; Nick Garrone; Srpouhi Gasparyan; Phyllis Gayda; Chad Goffstein; Courtney Gonzalez; Mariam Guirguis; Ryan Hassid; Aria Hong; Julie Hong; Lindsay Hovestreydt; Charles Hu; Farid Jamshidian; Katrin Kahen; Linda Kao; Melissa Kelley; Thomas Kho; Sarah Kim; Yein Kim; Brian Kirkpatrick; Emil Kohan; Robert Kwak; Adam Langenbacher; Santino Laxamana; Chris Lee; Janet Lee; So-Youn Lee; To Hang S Lee; Toni Lee; Sheila Lezcano; Henry Lin; Peter Lin; Julie Luu; Thanh Luu; Will Marrs; Erin Marsh; Sarah Min; Tanya Minasian; Amit Misra; Miles Morimoto; Yasaman Moshfegh; Jessica Murray; Cynthia Nguyen; Kha Nguyen; Ernesto Nodado; Amanda O'Donahue; Ndidi Onugha; Nneka Orjiakor; Bhavin Padhiar; Mara Pavel-Dinu; Alex Pavlenko; Edwin Paz; Sarah Phaklides; Lephong Pham; Preethi Poulose; Russell Powell; Aya Pusic; Divi Ramola; Meghann Ribbens; Bassel Rifai; Desiree Rosselli; Manyak Saakyan; Pamela Saarikoski; Miriam Segura; Ramnik Singh; Vivek Singh; Emily Skinner; Daniel Solomin; Kosha Soneji; Erika Stageberg; Marina Stavchanskiy; Leena Tekchandani; Leo Thai; Jayantha Thiyanaratnam; Maurine Tong; Aneet Toor; Steve Tovar; Kelly Trangsrud; Wah-Yung Tsang; Marc Uemura; Mary Unkovic; Emily Vollmer; Emily Weiss; Damien Wood; Sophia Wu; Winston Wu; Qing Xu; Kevin Yackle; Will Yarosh; Laura Yee; George Yen; Grant Alkin; Sheryllene Go; Devon M Huff; Helena Minye; Eric Paul; Nikki Villarasa; Allison Milchanowski; Utpal Banerjee
Journal:  PLoS Biol       Date:  2005-02       Impact factor: 8.029

10.  The undergraduate genomics research initiative.

Authors:  Cheryl A Kerfeld; Robert W Simons
Journal:  PLoS Biol       Date:  2007-05       Impact factor: 8.029

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  4 in total

1.  Implementation and assessment of a yeast orphan gene research project: involving undergraduates in authentic research experiences and progressing our understanding of uncharacterized open reading frames.

Authors:  Bethany V Bowling; Patrick J Schultheis; Erin D Strome
Journal:  Yeast       Date:  2015-11-10       Impact factor: 3.239

2.  GCAT-SEEKquence: genome consortium for active teaching of undergraduates through increased faculty access to next-generation sequencing data.

Authors:  Vincent P Buonaccorsi; Michael D Boyle; Deborah Grove; Craig Praul; Eric Sakk; Ash Stuart; Tammy Tobin; Jay Hosler; Susan L Carney; Michael J Engle; Barry E Overton; Jeffrey D Newman; Marie Pizzorno; Jennifer R Powell; Nancy Trun
Journal:  CBE Life Sci Educ       Date:  2011       Impact factor: 3.325

3.  Do you kiss your mother with that mouth? An authentic large-scale undergraduate research experience in mapping the human oral microbiome.

Authors:  Jack T H Wang; Joshua N Daly; Dana L Willner; Jayee Patil; Roy A Hall; Mark A Schembri; Gene W Tyson; Philip Hugenholtz
Journal:  J Microbiol Biol Educ       Date:  2015-05-01

Review 4.  Microbiomes for All.

Authors:  Theodore R Muth; Avrom J Caplan
Journal:  Front Microbiol       Date:  2020-11-12       Impact factor: 5.640

  4 in total

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