Literature DB >> 23648838

Colocalization of fast and slow timescale dynamics in the allosteric signaling protein CheY.

Leanna R McDonald1, Matthew J Whitley, Joshua A Boyer, Andrew L Lee.   

Abstract

It is now widely recognized that dynamics are important to consider for understanding allosteric protein function. However, dynamics occur over a wide range of timescales, and how these different motions relate to one another is not well understood. Here, we report an NMR relaxation study of dynamics over multiple timescales at both backbone and side-chain sites upon an allosteric response to phosphorylation. The response regulator, Escherichia coli CheY, allosterically responds to phosphorylation with a change in dynamics on both the microsecond-to-millisecond (μs-ms) timescale and the picosecond-to-nanosecond (ps-ns) timescale. We observe an apparent decrease and redistribution of μs-ms dynamics upon phosphorylation (and accompanying Mg(2+) saturation) of CheY. Additionally, methyl groups with the largest changes in ps-ns dynamics localize to the regions of conformational change measured by μs-ms dynamics. The limited spread of changes in ps-ns dynamics suggests a distinct relationship between motions on the μs-ms and ps-ns timescales in CheY. The allosteric mechanism utilized by CheY highlights the diversity of roles dynamics play in protein function.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 23648838      PMCID: PMC3703654          DOI: 10.1016/j.jmb.2013.04.029

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  48 in total

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Authors:  M Schuster; R Zhao; R B Bourret; E J Collins
Journal:  J Biol Chem       Date:  2000-06-30       Impact factor: 5.157

2.  Redistribution and loss of side chain entropy upon formation of a calmodulin-peptide complex.

Authors:  A L Lee; S A Kinnear; A J Wand
Journal:  Nat Struct Biol       Date:  2000-01

3.  A molecular mechanism of direction switching in the flagellar motor of Escherichia coli.

Authors:  Koushik Paul; Duncan Brunstetter; Sienna Titen; David F Blair
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-03       Impact factor: 11.205

4.  Segmental motions, not a two-state concerted switch, underlie allostery in CheY.

Authors:  Leanna R McDonald; Joshua A Boyer; Andrew L Lee
Journal:  Structure       Date:  2012-06-21       Impact factor: 5.006

5.  3D HCCH(3)-TOCSY for resonance assignment of methyl-containing side chains in (13)C-labeled proteins.

Authors:  D Uhrín; S Uhrínová; C Leadbeater; J Nairn; N C Price; P N Barlow
Journal:  J Magn Reson       Date:  2000-02       Impact factor: 2.229

6.  Beryllofluoride mimics phosphorylation of NtrC and other bacterial response regulators.

Authors:  D Yan; H S Cho; C A Hastings; M M Igo; S Y Lee; J G Pelton; V Stewart; D E Wemmer; S Kustu
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-21       Impact factor: 11.205

7.  NMR structure of activated CheY.

Authors:  H S Cho; S Y Lee; D Yan; X Pan; J S Parkinson; S Kustu; D E Wemmer; J G Pelton
Journal:  J Mol Biol       Date:  2000-03-31       Impact factor: 5.469

8.  Crystal structure of an activated response regulator bound to its target.

Authors:  S Y Lee; H S Cho; J G Pelton; D Yan; R K Henderson; D S King; L Huang; S Kustu; E A Berry; D E Wemmer
Journal:  Nat Struct Biol       Date:  2001-01

Review 9.  NMR insights into protein allostery.

Authors:  Gregory Manley; J Patrick Loria
Journal:  Arch Biochem Biophys       Date:  2011-12-16       Impact factor: 4.013

10.  Nuclear magnetic resonance structure and dynamics of the response regulator Sma0114 from Sinorhizobium meliloti.

Authors:  Sarah R Sheftic; Preston P Garcia; Emma White; Victoria L Robinson; Daniel J Gage; Andrei T Alexandrescu
Journal:  Biochemistry       Date:  2012-08-21       Impact factor: 3.162

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  17 in total

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Journal:  Biophys J       Date:  2015-06-16       Impact factor: 4.033

2.  Multiple CheY Homologs Control Swimming Reversals and Transient Pauses in Azospirillum brasilense.

Authors:  Tanmoy Mukherjee; Mustafa Elmas; Lam Vo; Vasilios Alexiades; Tian Hong; Gladys Alexandre
Journal:  Biophys J       Date:  2019-03-21       Impact factor: 4.033

Review 3.  What Mutagenesis Can and Cannot Reveal About Allostery.

Authors:  Gerald M Carlson; Aron W Fenton
Journal:  Biophys J       Date:  2016-05-10       Impact factor: 4.033

4.  Widespread Perturbation of Function, Structure, and Dynamics by a Conservative Single-Atom Substitution in Thymidylate Synthase.

Authors:  Paul J Sapienza; Andrew L Lee
Journal:  Biochemistry       Date:  2016-09-30       Impact factor: 3.162

5.  Ligand-induced folding of a two-component signaling receiver domain.

Authors:  Victor J Ocasio; Fernando Corrêa; Kevin H Gardner
Journal:  Biochemistry       Date:  2015-02-06       Impact factor: 3.162

6.  Conformational dynamics are a key factor in signaling mediated by the receiver domain of a sensor histidine kinase from Arabidopsis thaliana.

Authors:  Olga Otrusinová; Gabriel Demo; Petr Padrta; Zuzana Jaseňáková; Blanka Pekárová; Zuzana Gelová; Agnieszka Szmitkowska; Pavel Kadeřávek; Séverine Jansen; Milan Zachrdla; Tomáš Klumpler; Jaromír Marek; Jozef Hritz; Lubomír Janda; Hideo Iwaï; Michaela Wimmerová; Jan Hejátko; Lukáš Žídek
Journal:  J Biol Chem       Date:  2017-08-31       Impact factor: 5.157

7.  Conformational Dynamics of Response Regulator RegX3 from Mycobacterium tuberculosis.

Authors:  Ashfaq Ahmad; Yongfei Cai; Xingqiang Chen; Jianwei Shuai; Aidong Han
Journal:  PLoS One       Date:  2015-07-22       Impact factor: 3.240

8.  ARD1-mediated Hsp70 acetylation balances stress-induced protein refolding and degradation.

Authors:  Ji Hae Seo; Ji-Hyeon Park; Eun Ji Lee; Tam Thuy Lu Vo; Hoon Choi; Jun Yong Kim; Jae Kyung Jang; Hee-Jun Wee; Hye Shin Lee; Se Hwan Jang; Zee Yong Park; Jaeho Jeong; Kong-Joo Lee; Seung-Hyeon Seok; Jin Young Park; Bong Jin Lee; Mi-Ni Lee; Goo Taeg Oh; Kyu-Won Kim
Journal:  Nat Commun       Date:  2016-10-06       Impact factor: 14.919

9.  Evidence against the "Y-T coupling" mechanism of activation in the response regulator NtrC.

Authors:  Janice Villali; Francesco Pontiggia; Michael W Clarkson; Michael F Hagan; Dorothee Kern
Journal:  J Mol Biol       Date:  2014-01-07       Impact factor: 5.469

10.  Prediction of allosteric sites and mediating interactions through bond-to-bond propensities.

Authors:  B R C Amor; M T Schaub; S N Yaliraki; M Barahona
Journal:  Nat Commun       Date:  2016-08-26       Impact factor: 14.919

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