Literature DB >> 22727815

Segmental motions, not a two-state concerted switch, underlie allostery in CheY.

Leanna R McDonald1, Joshua A Boyer, Andrew L Lee.   

Abstract

The switch between an inactive and active conformation is an important transition for signaling proteins, yet the mechanisms underlying such switches are not clearly understood. pan class="Species">Escherichia colin> CheY, a response regulator protein from the two-component signal transduction system that regulates bacterial chemotaxis, is an ideal protein for the study of allosteric mechanisms. By using pan class="Chemical">15N pan class="Chemical">CPMG relaxation dispersion experiments, we monitored the inherent dynamic switching of unphosphorylated CheY. We show that CheY does not undergo a two-state concerted switch between the inactive and active conformations. Interestingly, partial saturation of Mg2+ enhances the intrinsic allosteric motions. Taken together with chemical shift perturbations, these data indicate that the μs-ms timescale motions underlying CheY allostery are segmental in nature. We propose an expanded allosteric network of residues, including W58, that undergo asynchronous, local switching between inactive and active-like conformations as the primary basis for the allosteric mechanism.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22727815      PMCID: PMC3552614          DOI: 10.1016/j.str.2012.05.008

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  53 in total

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2.  Conformational changes induced by phosphorylation of the FixJ receiver domain.

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3.  From induced fit to conformational selection: a continuum of binding mechanism controlled by the timescale of conformational transitions.

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Journal:  J Mol Biol       Date:  2010-11-16       Impact factor: 5.469

5.  Conformational selection or induced fit: a flux description of reaction mechanism.

Authors:  Gordon G Hammes; Yu-Chu Chang; Terrence G Oas
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-30       Impact factor: 11.205

6.  Conformational selection and induced fit mechanism underlie specificity in noncovalent interactions with ubiquitin.

Authors:  Tomasz Wlodarski; Bojan Zagrovic
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-03       Impact factor: 11.205

7.  Beryllofluoride mimics phosphorylation of NtrC and other bacterial response regulators.

Authors:  D Yan; H S Cho; C A Hastings; M M Igo; S Y Lee; J G Pelton; V Stewart; D E Wemmer; S Kustu
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-21       Impact factor: 11.205

8.  Mechanisms of allosteric gene regulation by NMR quantification of microsecond-millisecond protein dynamics.

Authors:  Ian R Kleckner; Paul Gollnick; Mark P Foster
Journal:  J Mol Biol       Date:  2011-11-15       Impact factor: 5.469

9.  Dynamic activation of an allosteric regulatory protein.

Authors:  Shiou-Ru Tzeng; Charalampos G Kalodimos
Journal:  Nature       Date:  2009-11-19       Impact factor: 49.962

10.  Transient non-native hydrogen bonds promote activation of a signaling protein.

Authors:  Alexandra K Gardino; Janice Villali; Aleksandr Kivenson; Ming Lei; Ce Feng Liu; Phillip Steindel; Elan Z Eisenmesser; Wladimir Labeikovsky; Magnus Wolf-Watz; Michael W Clarkson; Dorothee Kern
Journal:  Cell       Date:  2009-12-11       Impact factor: 41.582

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  26 in total

1.  Networks of Dynamic Allostery Regulate Enzyme Function.

Authors:  Michael Joseph Holliday; Carlo Camilloni; Geoffrey Stuart Armstrong; Michele Vendruscolo; Elan Zohar Eisenmesser
Journal:  Structure       Date:  2017-01-12       Impact factor: 5.006

2.  The role of protein dynamics in allosteric effects-introduction.

Authors:  Gordon Roberts
Journal:  Biophys Rev       Date:  2015-05-09

Review 3.  Contrasting roles of dynamics in protein allostery: NMR and structural studies of CheY and the third PDZ domain from PSD-95.

Authors:  Andrew L Lee
Journal:  Biophys Rev       Date:  2015-04-22

4.  Inherent dynamics within the Crimean-Congo Hemorrhagic fever virus protease are localized to the same region as substrate interactions.

Authors:  Elan Z Eisenmesser; Glenn C Capodagli; Geoffrey S Armstrong; Michael J Holliday; Nancy G Isern; Fengli Zhang; Scott D Pegan
Journal:  Protein Sci       Date:  2015-01-28       Impact factor: 6.725

Review 5.  What Mutagenesis Can and Cannot Reveal About Allostery.

Authors:  Gerald M Carlson; Aron W Fenton
Journal:  Biophys J       Date:  2016-05-10       Impact factor: 4.033

6.  Chemical shift imprint of intersubunit communication in a symmetric homodimer.

Authors:  Bradley T Falk; Paul J Sapienza; Andrew L Lee
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-27       Impact factor: 11.205

7.  Ligand-induced folding of a two-component signaling receiver domain.

Authors:  Victor J Ocasio; Fernando Corrêa; Kevin H Gardner
Journal:  Biochemistry       Date:  2015-02-06       Impact factor: 3.162

8.  Conformational dynamics are a key factor in signaling mediated by the receiver domain of a sensor histidine kinase from Arabidopsis thaliana.

Authors:  Olga Otrusinová; Gabriel Demo; Petr Padrta; Zuzana Jaseňáková; Blanka Pekárová; Zuzana Gelová; Agnieszka Szmitkowska; Pavel Kadeřávek; Séverine Jansen; Milan Zachrdla; Tomáš Klumpler; Jaromír Marek; Jozef Hritz; Lubomír Janda; Hideo Iwaï; Michaela Wimmerová; Jan Hejátko; Lukáš Žídek
Journal:  J Biol Chem       Date:  2017-08-31       Impact factor: 5.157

9.  Basis of Mutual Domain Inhibition in a Bacterial Response Regulator.

Authors:  Fernando Corrêa; Kevin H Gardner
Journal:  Cell Chem Biol       Date:  2016-08-11       Impact factor: 8.116

10.  Nonconserved active site residues modulate CheY autophosphorylation kinetics and phosphodonor preference.

Authors:  Stephanie A Thomas; Robert M Immormino; Robert B Bourret; Ruth E Silversmith
Journal:  Biochemistry       Date:  2013-03-19       Impact factor: 3.162

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