Literature DB >> 23646824

Probing the physical determinants of thermal expansion of folded proteins.

Mariano Dellarole1, Kei Kobayashi, Jean-Baptiste Rouget, José Alfredo Caro, Julien Roche, Mohammad M Islam, Bertrand Garcia-Moreno E, Yutaka Kuroda, Catherine A Royer.   

Abstract

The magnitude and sign of the volume change upon protein unfolding are strongly dependent on temperature. This temperature dependence reflects differences in the thermal expansivity of the folded and unfolded states. The factors that determine protein molar expansivities and the large differences in thermal expansivity for proteins of similar molar volume are not well understood. Model compound studies have suggested that a major contribution is made by differences in the molar volume of water molecules as they transfer from the protein surface to the bulk upon heating. The expansion of internal solvent-excluded voids upon heating is another possible contributing factor. Here, the contribution from hydration density to the molar thermal expansivity of a protein was examined by comparing bovine pancreatic trypsin inhibitor and variants with alanine substitutions at or near the protein-water interface. Variants of two of these proteins with an additional mutation that unfolded them under native conditions were also examined. A modest decrease in thermal expansivity was observed in both the folded and unfolded states for the alanine variants compared with the parent protein, revealing that large changes can be made to the external polarity of a protein without causing large ensuing changes in thermal expansivity. This modest effect is not surprising, given the small molar volume of the alanine residue. Contributions of the expansion of the internal void volume were probed by measuring the thermal expansion for cavity-containing variants of a highly stable form of staphylococcal nuclease. Significantly larger (2-3-fold) molar expansivities were found for these cavity-containing proteins relative to the reference protein. Taken together, these results suggest that a key determinant of the thermal expansivities of folded proteins lies in the expansion of internal solvent-excluded voids.

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Year:  2013        PMID: 23646824     DOI: 10.1021/jp401113p

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  7 in total

1.  High-Resolution Mapping of a Repeat Protein Folding Free Energy Landscape.

Authors:  Martin J Fossat; Thuy P Dao; Kelly Jenkins; Mariano Dellarole; Yinshan Yang; Scott A McCallum; Angel E Garcia; Doug Barrick; Christian Roumestand; Catherine A Royer
Journal:  Biophys J       Date:  2016-12-06       Impact factor: 4.033

Review 2.  Lessons from pressure denaturation of proteins.

Authors:  Julien Roche; Catherine A Royer
Journal:  J R Soc Interface       Date:  2018-10-03       Impact factor: 4.118

3.  Structural and Thermodynamic Properties of Septin 3 Investigated by Small-Angle X-Ray Scattering.

Authors:  Maria Grazia Ortore; Joci N A Macedo; Ana Paula U Araujo; Claudio Ferrero; Paolo Mariani; Francesco Spinozzi; Rosangela Itri
Journal:  Biophys J       Date:  2015-06-16       Impact factor: 4.033

4.  Practical aspects of high-pressure NMR spectroscopy and its applications in protein biophysics and structural biology.

Authors:  José A Caro; A Joshua Wand
Journal:  Methods       Date:  2018-06-30       Impact factor: 3.608

Review 5.  Wanted: scalable tracers for diffusion measurements.

Authors:  Michael J Saxton
Journal:  J Phys Chem B       Date:  2014-11-03       Impact factor: 2.991

6.  The Principles of Buoyancy in Marine Fish Eggs and Their Vertical Distributions across the World Oceans.

Authors:  Svein Sundby; Trond Kristiansen
Journal:  PLoS One       Date:  2015-10-14       Impact factor: 3.240

7.  Physicochemical origin of high correlation between thermal stability of a protein and its packing efficiency: a theoretical study for staphylococcal nuclease mutants.

Authors:  Koji Oda; Masahiro Kinoshita
Journal:  Biophys Physicobiol       Date:  2015-07-31
  7 in total

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