Literature DB >> 23645200

Comparative genomics of Bifidobacterium animalis subsp. lactis reveals a strict monophyletic bifidobacterial taxon.

Christian Milani1, Sabrina Duranti, Gabriele Andrea Lugli, Francesca Bottacini, Francesco Strati, Stefania Arioli, Elena Foroni, Francesca Turroni, Douwe van Sinderen, Marco Ventura.   

Abstract

Strains of Bifidobacterium animalis subsp. lactis are extensively exploited by the food industry as health-promoting bacteria, although the genetic variability of members belonging to this taxon has so far not received much scientific attention. In this article, we describe the complete genetic makeup of the B. animalis subsp. lactis Bl12 genome and discuss the genetic relatedness of this strain with other sequenced strains belonging to this taxon. Moreover, a detailed comparative genomic analysis of B. animalis subsp. lactis genomes was performed, which revealed a closely related and isogenic nature of all currently available B. animalis subsp. lactis strains, thus strongly suggesting a closed pan-genome structure of this bacterial group.

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Year:  2013        PMID： 23645200      PMCID： PMC3697524          DOI： 10.1128/AEM.00984-13

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  61 in total

1.  Identification of genes that are associated with DNA repeats in prokaryotes.

Authors:  Ruud Jansen; Jan D A van Embden; Wim Gaastra; Leo M Schouls
Journal:  Mol Microbiol       Date:  2002-03       Impact factor: 3.501

Review 2.  Probiogenomics as a tool to obtain genetic insights into adaptation of probiotic bacteria to the human gut.

Authors:  Marco Ventura; Francesca Turroni; Douwe van Sinderen
Journal:  Bioeng Bugs       Date:  2012-03-01

3.  Genome analysis of Bifidobacterium bifidum PRL2010 reveals metabolic pathways for host-derived glycan foraging.

Authors:  Francesca Turroni; Francesca Bottacini; Elena Foroni; Imke Mulder; Jae-Han Kim; Aldert Zomer; Borja Sánchez; Alessandro Bidossi; Alberto Ferrarini; Vanessa Giubellini; Massimo Delledonne; Bernard Henrissat; Pedro Coutinho; Marco Oggioni; Gerald F Fitzgerald; David Mills; Abelardo Margolles; Denise Kelly; Douwe van Sinderen; Marco Ventura
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-25       Impact factor: 11.205

4.  Multiple sequence alignment using ClustalW and ClustalX.

Authors:  Julie D Thompson; Toby J Gibson; Des G Higgins
Journal:  Curr Protoc Bioinformatics       Date:  2002-08

5.  Complete genome sequences of probiotic strains Bifidobacterium animalis subsp. lactis B420 and Bi-07.

Authors:  Buffy Stahl; Rodolphe Barrangou
Journal:  J Bacteriol       Date:  2012-08       Impact factor: 3.490

6.  Identification of protein coding regions by database similarity search.

Authors:  W Gish; D J States
Journal:  Nat Genet       Date:  1993-03       Impact factor: 38.330

7.  The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract.

Authors:  Mark A Schell; Maria Karmirantzou; Berend Snel; David Vilanova; Bernard Berger; Gabriella Pessi; Marie-Camille Zwahlen; Frank Desiere; Peer Bork; Michele Delley; R David Pridmore; Fabrizio Arigoni
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-15       Impact factor: 11.205

8.  Comparison of the complete genome sequences of Bifidobacterium animalis subsp. lactis DSM 10140 and Bl-04.

Authors:  Rodolphe Barrangou; Elizabeth P Briczinski; Lindsay L Traeger; Joseph R Loquasto; Melissa Richards; Philippe Horvath; Anne-Claire Coûté-Monvoisin; Gregory Leyer; Snjezana Rendulic; James L Steele; Jeffery R Broadbent; Taylor Oberg; Edward G Dudley; Stephan Schuster; Dennis A Romero; Robert F Roberts
Journal:  J Bacteriol       Date:  2009-04-17       Impact factor: 3.490

9.  The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome.

Authors:  D A Sela; J Chapman; A Adeuya; J H Kim; F Chen; T R Whitehead; A Lapidus; D S Rokhsar; C B Lebrilla; J B German; N P Price; P M Richardson; D A Mills
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-24       Impact factor: 11.205

10.  Strain-specific genotyping of Bifidobacterium animalis subsp. lactis by using single-nucleotide polymorphisms, insertions, and deletions.

Authors:  Elizabeth P Briczinski; Joseph R Loquasto; Rodolphe Barrangou; Edward G Dudley; Anastasia M Roberts; Robert F Roberts
Journal:  Appl Environ Microbiol       Date:  2009-10-02       Impact factor: 4.792
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  37 in total

1.  Bifidobacterium animalis subsp. lactis ATCC 27673 is a genomically unique strain within its conserved subspecies.

Authors:  Joseph R Loquasto; Rodolphe Barrangou; Edward G Dudley; Buffy Stahl; Chun Chen; Robert F Roberts
Journal:  Appl Environ Microbiol       Date:  2013-08-30       Impact factor: 4.792

2.  Genomic characterization and transcriptional studies of the starch-utilizing strain Bifidobacterium adolescentis 22L.

Authors:  Sabrina Duranti; Francesca Turroni; Gabriele Andrea Lugli; Christian Milani; Alice Viappiani; Marta Mangifesta; Laura Gioiosa; Paola Palanza; Douwe van Sinderen; Marco Ventura
Journal:  Appl Environ Microbiol       Date:  2014-07-25       Impact factor: 4.792

Review 3.  Genomic overview and biological functions of exopolysaccharide biosynthesis in Bifidobacterium spp.

Authors:  Claudio Hidalgo-Cantabrana; Borja Sánchez; Christian Milani; Marco Ventura; Abelardo Margolles; Patricia Ruas-Madiedo
Journal:  Appl Environ Microbiol       Date:  2013-10-11       Impact factor: 4.792

4.  Comparative investigation of the various determinants that influence the codon and amino acid usage patterns in the genus Bifidobacterium.

Authors:  Ayan Roy; Subhasish Mukhopadhyay; Indrani Sarkar; Arnab Sen
Journal:  World J Microbiol Biotechnol       Date:  2015-04-05       Impact factor: 3.312

5.  Diversity of the type I-U CRISPR-Cas system in Bifidobacterium.

Authors:  Liuyang Ou; Jinzhao Long; Yanli Teng; Haiyan Yang; Yuanlin Xi; Guangcai Duan; Shuaiyin Chen
Journal:  Arch Microbiol       Date:  2021-04-09       Impact factor: 2.552

6.  Unveiling Genomic Diversity among Members of the Species Bifidobacterium pseudolongum, a Widely Distributed Gut Commensal of the Animal Kingdom.

Authors:  Gabriele Andrea Lugli; Sabrina Duranti; Korin Albert; Leonardo Mancabelli; Stefania Napoli; Alice Viappiani; Rosaria Anzalone; Giulia Longhi; Christian Milani; Francesca Turroni; Giulia Alessandri; David A Sela; Douwe van Sinderen; Marco Ventura
Journal:  Appl Environ Microbiol       Date:  2019-04-04       Impact factor: 4.792

7.  Tracking the Taxonomy of the Genus Bifidobacterium Based on a Phylogenomic Approach.

Authors:  Gabriele Andrea Lugli; Christian Milani; Sabrina Duranti; Leonardo Mancabelli; Marta Mangifesta; Francesca Turroni; Alice Viappiani; Douwe van Sinderen; Marco Ventura
Journal:  Appl Environ Microbiol       Date:  2018-01-31       Impact factor: 4.792

8.  Prevalence of Antibiotic Resistance Genes among Human Gut-Derived Bifidobacteria.

Authors:  Sabrina Duranti; Gabriele Andrea Lugli; Leonardo Mancabelli; Francesca Turroni; Christian Milani; Marta Mangifesta; Chiara Ferrario; Rosaria Anzalone; Alice Viappiani; Douwe van Sinderen; Marco Ventura
Journal:  Appl Environ Microbiol       Date:  2017-01-17       Impact factor: 4.792

9.  Dissecting the Evolutionary Development of the Species Bifidobacterium animalis through Comparative Genomics Analyses.

Authors:  Gabriele Andrea Lugli; Walter Mancino; Christian Milani; Sabrina Duranti; Leonardo Mancabelli; Stefania Napoli; Marta Mangifesta; Alice Viappiani; Rosaria Anzalone; Giulia Longhi; Douwe van Sinderen; Marco Ventura; Francesca Turroni
Journal:  Appl Environ Microbiol       Date:  2019-03-22       Impact factor: 4.792

Review 10.  Genomics of the Genus Bifidobacterium Reveals Species-Specific Adaptation to the Glycan-Rich Gut Environment.

Authors:  Christian Milani; Francesca Turroni; Sabrina Duranti; Gabriele Andrea Lugli; Leonardo Mancabelli; Chiara Ferrario; Douwe van Sinderen; Marco Ventura
Journal:  Appl Environ Microbiol       Date:  2015-11-20       Impact factor: 4.792
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