Literature DB >> 20974960

Genome analysis of Bifidobacterium bifidum PRL2010 reveals metabolic pathways for host-derived glycan foraging.

Francesca Turroni1, Francesca Bottacini, Elena Foroni, Imke Mulder, Jae-Han Kim, Aldert Zomer, Borja Sánchez, Alessandro Bidossi, Alberto Ferrarini, Vanessa Giubellini, Massimo Delledonne, Bernard Henrissat, Pedro Coutinho, Marco Oggioni, Gerald F Fitzgerald, David Mills, Abelardo Margolles, Denise Kelly, Douwe van Sinderen, Marco Ventura.   

Abstract

The human intestine is densely populated by a microbial consortium whose metabolic activities are influenced by, among others, bifidobacteria. However, the genetic basis of adaptation of bifidobacteria to the human gut is poorly understood. Analysis of the 2,214,650-bp genome of Bifidobacterium bifidum PRL2010, a strain isolated from infant stool, revealed a nutrient-acquisition strategy that targets host-derived glycans, such as those present in mucin. Proteome and transcriptome profiling revealed a set of chromosomal loci responsible for mucin metabolism that appear to be under common transcriptional control and with predicted functions that allow degradation of various O-linked glycans in mucin. Conservation of the latter gene clusters in various B. bifidum strains supports the notion that host-derived glycan catabolism is an important colonization factor for B. bifidum with concomitant impact on intestinal microbiota ecology.

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Year:  2010        PMID: 20974960      PMCID: PMC2984195          DOI: 10.1073/pnas.1011100107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  46 in total

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Authors:  Takane Katayama; Akiko Sakuma; Takatoshi Kimura; Yutaka Makimura; Jun Hiratake; Kanzo Sakata; Takashi Yamanoi; Hidehiko Kumagai; Kenji Yamamoto
Journal:  J Bacteriol       Date:  2004-08       Impact factor: 3.490

Review 3.  Respiratory tract mucin genes and mucin glycoproteins in health and disease.

Authors:  Mary Callaghan Rose; Judith A Voynow
Journal:  Physiol Rev       Date:  2006-01       Impact factor: 37.312

4.  Microbiomic analysis of the bifidobacterial population in the human distal gut.

Authors:  Francesca Turroni; Julian R Marchesi; Elena Foroni; Miguel Gueimonde; Fergus Shanahan; Abelardo Margolles; Douwe van Sinderen; Marco Ventura
Journal:  ISME J       Date:  2009-03-19       Impact factor: 10.302

5.  The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract.

Authors:  Mark A Schell; Maria Karmirantzou; Berend Snel; David Vilanova; Bernard Berger; Gabriella Pessi; Marie-Camille Zwahlen; Frank Desiere; Peer Bork; Michele Delley; R David Pridmore; Fabrizio Arigoni
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-15       Impact factor: 11.205

6.  Cooperation of β-galactosidase and β-N-acetylhexosaminidase from bifidobacteria in assimilation of human milk oligosaccharides with type 2 structure.

Authors:  Mika Miwa; Tomohiro Horimoto; Masashi Kiyohara; Takane Katayama; Motomitsu Kitaoka; Hisashi Ashida; Kenji Yamamoto
Journal:  Glycobiology       Date:  2010-06-24       Impact factor: 4.313

Review 7.  Novel bifidobacterial glycosidases acting on sugar chains of mucin glycoproteins.

Authors:  Takane Katayama; Kiyotaka Fujita; Kenji Yamamoto
Journal:  J Biosci Bioeng       Date:  2005-05       Impact factor: 2.894

8.  Comparison of the complete genome sequences of Bifidobacterium animalis subsp. lactis DSM 10140 and Bl-04.

Authors:  Rodolphe Barrangou; Elizabeth P Briczinski; Lindsay L Traeger; Joseph R Loquasto; Melissa Richards; Philippe Horvath; Anne-Claire Coûté-Monvoisin; Gregory Leyer; Snjezana Rendulic; James L Steele; Jeffery R Broadbent; Taylor Oberg; Edward G Dudley; Stephan Schuster; Dennis A Romero; Robert F Roberts
Journal:  J Bacteriol       Date:  2009-04-17       Impact factor: 3.490

9.  The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome.

Authors:  D A Sela; J Chapman; A Adeuya; J H Kim; F Chen; T R Whitehead; A Lapidus; D S Rokhsar; C B Lebrilla; J B German; N P Price; P M Richardson; D A Mills
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-24       Impact factor: 11.205

10.  Characterization of two different endo-alpha-N-acetylgalactosaminidases from probiotic and pathogenic enterobacteria, Bifidobacterium longum and Clostridium perfringens.

Authors:  Hisashi Ashida; Riichi Maki; Hayato Ozawa; Yasushi Tani; Masashi Kiyohara; Masaya Fujita; Akihiro Imamura; Hideharu Ishida; Makoto Kiso; Kenji Yamamoto
Journal:  Glycobiology       Date:  2008-06-17       Impact factor: 4.313

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  153 in total

Review 1.  Probiogenomics as a tool to obtain genetic insights into adaptation of probiotic bacteria to the human gut.

Authors:  Marco Ventura; Francesca Turroni; Douwe van Sinderen
Journal:  Bioeng Bugs       Date:  2012-03-01

Review 2.  Phylogenetic framework and molecular signatures for the main clades of the phylum Actinobacteria.

Authors:  Beile Gao; Radhey S Gupta
Journal:  Microbiol Mol Biol Rev       Date:  2012-03       Impact factor: 11.056

3.  Physiology of consumption of human milk oligosaccharides by infant gut-associated bifidobacteria.

Authors:  Sadaki Asakuma; Emi Hatakeyama; Tadasu Urashima; Erina Yoshida; Takane Katayama; Kenji Yamamoto; Hidehiko Kumagai; Hisashi Ashida; Junko Hirose; Motomitsu Kitaoka
Journal:  J Biol Chem       Date:  2011-08-09       Impact factor: 5.157

4.  Quantification of human fecal bifidobacterium species by use of quantitative real-time PCR analysis targeting the groEL gene.

Authors:  Jana Junick; Michael Blaut
Journal:  Appl Environ Microbiol       Date:  2012-02-03       Impact factor: 4.792

5.  Bifidobacterium animalis subsp. lactis ATCC 27673 is a genomically unique strain within its conserved subspecies.

Authors:  Joseph R Loquasto; Rodolphe Barrangou; Edward G Dudley; Buffy Stahl; Chun Chen; Robert F Roberts
Journal:  Appl Environ Microbiol       Date:  2013-08-30       Impact factor: 4.792

6.  Global genome transcription profiling of Bifidobacterium bifidum PRL2010 under in vitro conditions and identification of reference genes for quantitative real-time PCR.

Authors:  Francesca Turroni; Elena Foroni; Barbara Montanini; Alice Viappiani; Francesco Strati; Sabrina Duranti; Alberto Ferrarini; Massimo Delledonne; Douwe van Sinderen; Marco Ventura
Journal:  Appl Environ Microbiol       Date:  2011-10-14       Impact factor: 4.792

7.  Reconstruction of the Bifidobacterial Pan-Secretome Reveals the Network of Extracellular Interactions between Bifidobacteria and the Infant Gut.

Authors:  Gabriele Andrea Lugli; Walter Mancino; Christian Milani; Sabrina Duranti; Francesca Turroni; Douwe van Sinderen; Marco Ventura
Journal:  Appl Environ Microbiol       Date:  2018-08-01       Impact factor: 4.792

8.  Mucin Cross-Feeding of Infant Bifidobacteria and Eubacterium hallii.

Authors:  Vera Bunesova; Christophe Lacroix; Clarissa Schwab
Journal:  Microb Ecol       Date:  2017-07-18       Impact factor: 4.552

9.  Metabolism of sialic acid by Bifidobacterium breve UCC2003.

Authors:  Muireann Egan; Mary O'Connell Motherway; Marco Ventura; Douwe van Sinderen
Journal:  Appl Environ Microbiol       Date:  2014-05-09       Impact factor: 4.792

10.  Dissecting the Evolutionary Development of the Species Bifidobacterium animalis through Comparative Genomics Analyses.

Authors:  Gabriele Andrea Lugli; Walter Mancino; Christian Milani; Sabrina Duranti; Leonardo Mancabelli; Stefania Napoli; Marta Mangifesta; Alice Viappiani; Rosaria Anzalone; Giulia Longhi; Douwe van Sinderen; Marco Ventura; Francesca Turroni
Journal:  Appl Environ Microbiol       Date:  2019-03-22       Impact factor: 4.792

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