Literature DB >> 15113097

Mining disease susceptibility genes through SNP analyses and expression profiling using MALDI-TOF mass spectrometry.

Kai Tang1, Paul Oeth, Stefan Kammerer, Mikhail F Denissenko, Jonas Ekblom, Christian Jurinke, Dirk van den Boom, Andreas Braun, Charles R Cantor.   

Abstract

To find genes that underlie disease susceptibilities, genome-wide single nucleotide polymorphisms (SNPs) have been analyzed using high-throughput matrix assisted laser desorption/ionization (MALDI) time-of-flight (TOF) mass spectrometry (MS). As a proof-of-concept for this approach, gene regions have been identified that were previously associated by others with certain diseases or traits. On the same technology platform, accurate and absolute transcriptional profiling can be performed and applied to allele expression analysis. Here, we provide a brief review of the technology and its applications to disease gene discovery.

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Year:  2004        PMID: 15113097     DOI: 10.1021/pr034080s

Source DB:  PubMed          Journal:  J Proteome Res        ISSN: 1535-3893            Impact factor:   4.466


  14 in total

1.  Comprehensive association testing of common mitochondrial DNA variation in metabolic disease.

Authors:  Richa Saxena; Paul I W de Bakker; Karyn Singer; Vamsi Mootha; Noel Burtt; Joel N Hirschhorn; Daniel Gaudet; Bo Isomaa; Mark J Daly; Leif Groop; Kristin G Ardlie; David Altshuler
Journal:  Am J Hum Genet       Date:  2006-05-24       Impact factor: 11.025

2.  Identification of the genetic basis for complex disorders by use of pooling-based genomewide single-nucleotide-polymorphism association studies.

Authors:  John V Pearson; Matthew J Huentelman; Rebecca F Halperin; Waibhav D Tembe; Stacey Melquist; Nils Homer; Marcel Brun; Szabolcs Szelinger; Keith D Coon; Victoria L Zismann; Jennifer A Webster; Thomas Beach; Sigrid B Sando; Jan O Aasly; Reinhard Heun; Frank Jessen; Heike Kolsch; Magdalini Tsolaki; Makrina Daniilidou; Eric M Reiman; Andreas Papassotiropoulos; Michael L Hutton; Dietrich A Stephan; David W Craig
Journal:  Am J Hum Genet       Date:  2006-12-06       Impact factor: 11.025

Review 3.  Application of mass spectrometry to molecular diagnostics of viral infections.

Authors:  Lilia M Ganova-Raeva; Yury E Khudyakov
Journal:  Expert Rev Mol Diagn       Date:  2013-05       Impact factor: 5.225

4.  Characterization of mitochondrial haplogroups in a large population-based sample from the United States.

Authors:  Sabrina L Mitchell; Robert Goodloe; Kristin Brown-Gentry; Sarah A Pendergrass; Deborah G Murdock; Dana C Crawford
Journal:  Hum Genet       Date:  2014-02-01       Impact factor: 4.132

5.  The RhoGAP protein DLC-1 functions as a metastasis suppressor in breast cancer cells.

Authors:  Steve Goodison; Jing Yuan; Derek Sloan; Ryung Kim; Cheng Li; Nicholas C Popescu; Virginia Urquidi
Journal:  Cancer Res       Date:  2005-07-15       Impact factor: 12.701

6.  Sensitive detection of human papillomavirus in cervical, head/neck, and schistosomiasis-associated bladder malignancies.

Authors:  H Yang; K Yang; A Khafagi; Y Tang; T E Carey; A W Opipari; R Lieberman; P A Oeth; W Lancaster; H P Klinger; A O Kaseb; A Metwally; H Khaled; D M Kurnit
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-24       Impact factor: 11.205

7.  Association between mitochondrial DNA haplogroup and myelodysplastic syndromes.

Authors:  Jenny N Poynter; Michaela Richardson; Erica Langer; Anthony J Hooten; Michelle Roesler; Betsy Hirsch; Phuong L Nguyen; Adina Cioc; Erica Warlick; Julie A Ross
Journal:  Genes Chromosomes Cancer       Date:  2016-06-21       Impact factor: 5.006

8.  Frequency of mutations and polymorphisms in borderline ovarian tumors of known cancer genes.

Authors:  Katherine Stemke-Hale; Kristy Shipman; Isidora Kitsou-Mylona; David G de Castro; Vicky Hird; Robert Brown; James Flanagan; Hani Gabra; Gordon B Mills; Roshan Agarwal; Mona El-Bahrawy
Journal:  Mod Pathol       Date:  2012-11-23       Impact factor: 7.842

9.  Inhibition of cell proliferation, induction of apoptosis, reactivation of DLC1, and modulation of other gene expression by dietary flavone in breast cancer cell lines.

Authors:  Veronika Ullmannova; Nicholas C Popescu
Journal:  Cancer Detect Prev       Date:  2007-04-06

Review 10.  Matrix-assisted laser desorption/ionisation, time-of-flight mass spectrometry in genomics research.

Authors:  Jiannis Ragoussis; Gareth P Elvidge; Kulvinder Kaur; Stefano Colella
Journal:  PLoS Genet       Date:  2006-07       Impact factor: 5.917

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