Literature DB >> 23635601

Implementation and management of a biomedical observation dictionary in a large healthcare information system.

Pierre-Yves Vandenbussche1, Sylvie Cormont, Christophe André, Christel Daniel, Jean Delahousse, Jean Charlet, Eric Lepage.   

Abstract

OBJECTIVE: This study shows the evolution of a biomedical observation dictionary within the Assistance Publique Hôpitaux Paris (AP-HP), the largest European university hospital group. The different steps are detailed as follows: the dictionary creation, the mapping to logical observation identifier names and codes (LOINC), the integration into a multiterminological management platform and, finally, the implementation in the health information system.
METHODS: AP-HP decided to create a biomedical observation dictionary named AnaBio, to map it to LOINC and to maintain the mapping. A management platform based on methods used for knowledge engineering has been put in place. It aims at integrating AnaBio within the health information system and improving both the quality and stability of the dictionary.
RESULTS: This new management platform is now active in AP-HP. The AnaBio dictionary is shared by 120 laboratories and currently includes 50 000 codes. The mapping implementation to LOINC reaches 40% of the AnaBio entries and uses 26% of LOINC records. The results of our work validate the choice made to develop a local dictionary aligned with LOINC. DISCUSSION AND
CONCLUSIONS: This work constitutes a first step towards a wider use of the platform. The next step will support the entire biomedical production chain, from the clinician prescription, through laboratory tests tracking in the laboratory information system to the communication of results and the use for decision support and biomedical research. In addition, the increase in the mapping implementation to LOINC ensures the interoperability allowing communication with other international health institutions.

Entities:  

Keywords:  Biomedical Observation; Dictionary; Knowledge representation; LOINC; Quality improvement

Mesh:

Year:  2013        PMID: 23635601      PMCID: PMC3756262          DOI: 10.1136/amiajnl-2012-001410

Source DB:  PubMed          Journal:  J Am Med Inform Assoc        ISSN: 1067-5027            Impact factor:   4.497


  16 in total

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Journal:  Ann Biol Clin (Paris)       Date:  1999 Nov-Dec       Impact factor: 0.459

2.  LOINC, a universal standard for identifying laboratory observations: a 5-year update.

Authors:  Clement J McDonald; Stanley M Huff; Jeffrey G Suico; Gilbert Hill; Dennis Leavelle; Raymond Aller; Arden Forrey; Kathy Mercer; Georges DeMoor; John Hook; Warren Williams; James Case; Pat Maloney
Journal:  Clin Chem       Date:  2003-04       Impact factor: 8.327

3.  Utilizing the UMLS for semantic mapping between terminologies.

Authors:  Kin Wah Fung; Olivier Bodenreider
Journal:  AMIA Annu Symp Proc       Date:  2005

4.  Towards a top-domain ontology for linking biomedical ontologies.

Authors:  Holger Stenzhorn; Elena Beisswanger; Stefan Schulz
Journal:  Stud Health Technol Inform       Date:  2007

5.  Evaluation of a "lexically assign, logically refine" strategy for semi-automated integration of overlapping terminologies.

Authors:  R H Dolin; S M Huff; R A Rocha; K A Spackman; K E Campbell
Journal:  J Am Med Inform Assoc       Date:  1998 Mar-Apr       Impact factor: 4.497

6.  Development of the Logical Observation Identifier Names and Codes (LOINC) vocabulary.

Authors:  S M Huff; R A Rocha; C J McDonald; G J De Moor; T Fiers; W D Bidgood; A W Forrey; W G Francis; W R Tracy; D Leavelle; F Stalling; B Griffin; P Maloney; D Leland; L Charles; K Hutchins; J Baenziger
Journal:  J Am Med Inform Assoc       Date:  1998 May-Jun       Impact factor: 4.497

7.  Mapping local laboratory interface terms to LOINC at a German university hospital using RELMA V.5: a semi-automated approach.

Authors:  Christian Zunner; Thomas Bürkle; Hans-Ulrich Prokosch; Thomas Ganslandt
Journal:  J Am Med Inform Assoc       Date:  2012-07-16       Impact factor: 4.497

8.  Logical observation identifier names and codes (LOINC) database: a public use set of codes and names for electronic reporting of clinical laboratory test results.

Authors:  A W Forrey; C J McDonald; G DeMoor; S M Huff; D Leavelle; D Leland; T Fiers; L Charles; B Griffin; F Stalling; A Tullis; K Hutchins; J Baenziger
Journal:  Clin Chem       Date:  1996-01       Impact factor: 8.327

9.  International Union of Pure and Applied Chemistry and International Federation of Clinical Chemistry, Committee on Nomenclature. Properties and Units (C-NPU): properties and units in the clinical laboratory sciences. IX. Properties and units in trace elements (IFCC-IUPAC technical report 1997).

Authors:  R Cornelis; X Fuentes-Arderiu; I Bruunshuus; D Templeton
Journal:  Eur J Clin Chem Clin Biochem       Date:  1997-10

10.  Combining laboratory data sets from multiple institutions using the logical observation identifier names and codes (LOINC).

Authors:  D M Baorto; J J Cimino; C A Parvin; M G Kahn
Journal:  Int J Med Inform       Date:  1998-07       Impact factor: 4.046

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  2 in total

1.  Learning From the Crowd in Terminology Mapping: The LOINC Experience.

Authors:  Brian E Dixon; John Hook; Daniel J Vreeman
Journal:  Lab Med       Date:  2015

Review 2.  Inflammation Thread Runs across Medical Laboratory Specialities.

Authors:  Urs Nydegger; Thomas Lung; Lorenz Risch; Martin Risch; Pedro Medina Escobar; Thomas Bodmer
Journal:  Mediators Inflamm       Date:  2016-07-14       Impact factor: 4.711

  2 in total

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