Literature DB >> 9524353

Evaluation of a "lexically assign, logically refine" strategy for semi-automated integration of overlapping terminologies.

R H Dolin1, S M Huff, R A Rocha, K A Spackman, K E Campbell.   

Abstract

OBJECTIVE: To evaluate a "lexically assign, logically refine" (LALR) strategy for merging overlapping healthcare terminologies. This strategy combines description logic classification with lexical techniques that propose initial term definitions. The lexically suggested initial definitions are manually refined by domain experts to yield description logic definitions for each term in the overlapping terminologies of interest. Logic-based techniques are then used to merge defined terms.
METHODS: A LALR strategy was applied to 7,763 LOINC and 2,050 SNOMED procedure terms using a common set of defining relationships taken from the LOINC data model. Candidate value restrictions were derived by lexically comparing the procedure's name with other terms contained in the reference SNOMED topography, living organism, function, and chemical axes. These candidate restrictions were reviewed by a domain expert, transformed into terminologic definitions for each of the terms, and then algorithmically classified.
RESULTS: The authors successfully defined 5,724 (73%) LOINC and 1,151 (56%) SNOMED procedure terms using a LALR strategy. Algorithmic classification of the defined concepts resulted in an organization mirroring that of the reference hierarchies. The classification techniques appropriately placed more detailed LOINC terms underneath the corresponding SNOMED terms, thus forming a complementary relationship between the LOINC and SNOMED terms. DISCUSSION: LALR is a successful strategy for merging overlapping terminologies in a test case where both terminologies can be defined using the same defining relationships, and where value restrictions can be drawn from a single reference hierarchy. Those concepts not having lexically suggested value restrictions frequently indicate gaps in the reference hierarchy.

Entities:  

Mesh:

Year:  1998        PMID: 9524353      PMCID: PMC61291          DOI: 10.1136/jamia.1998.0050203

Source DB:  PubMed          Journal:  J Am Med Inform Assoc        ISSN: 1067-5027            Impact factor:   4.497


  23 in total

1.  Tolerating spelling errors during patient validation.

Authors:  C Friedman; R Sideli
Journal:  Comput Biomed Res       Date:  1992-10

2.  An interlingua for electronic interchange of medical information: using frames to map between clinical vocabularies.

Authors:  F E Masarie; R A Miller; O Bouhaddou; N B Giuse; H R Warner
Journal:  Comput Biomed Res       Date:  1991-08

3.  Expressiveness and query complexity in an electronic health record data model.

Authors:  R H Dolin
Journal:  Proc AMIA Annu Fall Symp       Date:  1996

4.  Medicine and the nature of vertical reasoning.

Authors:  M S Blois
Journal:  N Engl J Med       Date:  1988-03-31       Impact factor: 91.245

5.  The Unified Medical Language System.

Authors:  D A Lindberg; B L Humphreys; A T McCray
Journal:  Methods Inf Med       Date:  1993-08       Impact factor: 2.176

6.  Goals for concept representation in the GALEN project.

Authors:  A L Rector; W A Nowlan; A Glowinski
Journal:  Proc Annu Symp Comput Appl Med Care       Date:  1993

7.  Automated translation between medical vocabularies using a frame-based interlingua.

Authors:  R A Rocha; B H Rocha; S M Huff
Journal:  Proc Annu Symp Comput Appl Med Care       Date:  1993

8.  Mapping clinically useful terminology to a controlled medical vocabulary.

Authors:  R C Barrows; J J Cimino; P D Clayton
Journal:  Proc Annu Symp Comput Appl Med Care       Date:  1994

9.  Lexical methods for managing variation in biomedical terminologies.

Authors:  A T McCray; S Srinivasan; A C Browne
Journal:  Proc Annu Symp Comput Appl Med Care       Date:  1994

10.  Using digrams to map controlled medical vocabularies.

Authors:  R A Rocha; S M Huff
Journal:  Proc Annu Symp Comput Appl Med Care       Date:  1994
View more
  19 in total

1.  The SNOMED RT Procedure Model.

Authors:  R H Dolin; K Spackman; A Abilla; C Correia; B Goldberg; D Konicek; J Lukoff; C B Lundberg
Journal:  Proc AMIA Symp       Date:  2001

2.  The integration of similar clinical research data collection instruments.

Authors:  Dorothy B Cohen; Sandra J Frawley; Mark A Shifman; Perry L Miller; Cynthia Brandt
Journal:  AMIA Annu Symp Proc       Date:  2003

3.  A system for automated lexical mapping.

Authors:  Jennifer Y Sun; Yao Sun
Journal:  J Am Med Inform Assoc       Date:  2006-02-24       Impact factor: 4.497

4.  Utilizing the UMLS for semantic mapping between terminologies.

Authors:  Kin Wah Fung; Olivier Bodenreider
Journal:  AMIA Annu Symp Proc       Date:  2005

5.  Leveraging Lexical Matching and Ontological Alignment to Map SNOMED CT Surgical Procedures to ICD-10-PCS.

Authors:  Kin Wah Fung; Julia Xu; Filip Ameye; Arturo Romero Gutiérrez; Arabella D'Havé
Journal:  AMIA Annu Symp Proc       Date:  2017-02-10

6.  Combining lexical and semantic methods of inter-terminology mapping using the UMLS.

Authors:  Kin Wah Fung; Olivier Bodenreider; Alan R Aronson; William T Hole; Suresh Srinivasan
Journal:  Stud Health Technol Inform       Date:  2007

7.  Compositional concept representation using SNOMED: towards further convergence of clinical terminologies.

Authors:  K A Spackman; K E Campbell
Journal:  Proc AMIA Symp       Date:  1998

Review 8.  The Copernican era of healthcare terminology: a re-centering of health information systems.

Authors:  C G Chute
Journal:  Proc AMIA Symp       Date:  1998

9.  A "lexically-suggested logical closure" metric for medical terminology maturity.

Authors:  K E Campbell; M S Tuttle; K A Spackman
Journal:  Proc AMIA Symp       Date:  1998

10.  Looking for Anemia (and Other Disorders) in SNOMED CT: Comparison of Three Approaches and Practical Implications.

Authors:  Fleur Mougin; Olivier Bodenreider; Anita Burgun
Journal:  AMIA Annu Symp Proc       Date:  2010-11-13
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.