Literature DB >> 23635212

A high-speed magnetic tweezer beyond 10,000 frames per second.

Bob M Lansdorp1, Shawn J Tabrizi, Andrew Dittmore, Omar A Saleh.   

Abstract

The magnetic tweezer is a single-molecule instrument that can apply a constant force to a biomolecule over a range of extensions, and is therefore an ideal tool to study biomolecules and their interactions. However, the video-based tracking inherent to most magnetic single-molecule instruments has traditionally limited the instrumental resolution to a few nanometers, above the length scale of single DNA base-pairs. Here we have introduced superluminescent diode illumination and high-speed camera detection to the magnetic tweezer, with graphics processing unit-accelerated particle tracking for high-speed analysis of video files. We have demonstrated the ability of the high-speed magnetic tweezer to resolve particle position to within 1 Å at 100 Hz, and to measure the extension of a 1566 bp DNA with 1 nm precision at 100 Hz in the presence of thermal noise.

Mesh:

Substances:

Year:  2013        PMID: 23635212     DOI: 10.1063/1.4802678

Source DB:  PubMed          Journal:  Rev Sci Instrum        ISSN: 0034-6748            Impact factor:   1.523


  21 in total

1.  High Spatiotemporal-Resolution Magnetic Tweezers: Calibration and Applications for DNA Dynamics.

Authors:  David Dulin; Tao Ju Cui; Jelmer Cnossen; Margreet W Docter; Jan Lipfert; Nynke H Dekker
Journal:  Biophys J       Date:  2015-11-17       Impact factor: 4.033

Review 2.  A mechanistic study of helicases with magnetic traps.

Authors:  Samar Hodeib; Saurabh Raj; Maria Manosas; Weiting Zhang; Debjani Bagchi; Bertrand Ducos; Francesca Fiorini; Joanne Kanaan; Hervé Le Hir; Jean-François Allemand; David Bensimon; Vincent Croquette
Journal:  Protein Sci       Date:  2017-06-13       Impact factor: 6.725

3.  Simple horizontal magnetic tweezers for micromanipulation of single DNA molecules and DNA-protein complexes.

Authors:  Christopher P McAndrew; Christopher Tyson; Joseph Zischkau; Patrick Mehl; Pamela L Tuma; Ian L Pegg; Abhijit Sarkar
Journal:  Biotechniques       Date:  2016-01-01       Impact factor: 1.993

Review 4.  Single-molecule approach for studying RNAP II transcription initiation using magnetic tweezers.

Authors:  Eric J Tomko; Eric A Galburt
Journal:  Methods       Date:  2019-03-18       Impact factor: 3.608

5.  Combined Magnetic Tweezers and Micro-mirror Total Internal Reflection Fluorescence Microscope for Single-Molecule Manipulation and Visualization.

Authors:  Yeonee Seol; Keir C Neuman
Journal:  Methods Mol Biol       Date:  2018

6.  Model-free 3D localization with precision estimates for brightfield-imaged particles.

Authors:  Daniel T Kovari; David Dunlap; Eric R Weeks; Laura Finzi
Journal:  Opt Express       Date:  2019-10-14       Impact factor: 3.894

7.  Modification to axial tracking for mobile magnetic microspheres.

Authors:  Laura A Carlucci; Wendy E Thomas
Journal:  Biophys Rep (N Y)       Date:  2021-11-10

8.  High-Performance Image-Based Measurements of Biological Forces and Interactions in a Dual Optical Trap.

Authors:  Jessica L Killian; James T Inman; Michelle D Wang
Journal:  ACS Nano       Date:  2018-11-20       Impact factor: 15.881

9.  Extending the range for force calibration in magnetic tweezers.

Authors:  Peter Daldrop; Hergen Brutzer; Alexander Huhle; Dominik J Kauert; Ralf Seidel
Journal:  Biophys J       Date:  2015-05-19       Impact factor: 4.033

10.  Synergistic Coordination of Chromatin Torsional Mechanics and Topoisomerase Activity.

Authors:  Tung T Le; Xiang Gao; Seong Ha Park; Jaeyoon Lee; James T Inman; Joyce H Lee; Jessica L Killian; Ryan P Badman; James M Berger; Michelle D Wang
Journal:  Cell       Date:  2019-10-17       Impact factor: 41.582

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