Literature DB >> 23634040

Ethyl (2E,4E)-5-(3-bromo-phenyl-sulfon-yl)penta-2,4-dienoate.

V Sabari1, Ulaganathan Sankar, Ramakrishnan Uma, S Aravindhan.   

Abstract

In the title compound, C13H13BrO4S, both C=C double bonds adopt an E conformation. The S atom has a distorted tetra-hedral geometry with bond angles ranging from 102.17 (13) to 119.77 (14)°. The ethyl acrylate substituent adopts an extented conformation with all torsion angles close to 180°. In the crystal, mol-ecules are linked into centrosymmetric R 2 (2)(14) dimers via pairs of C-H⋯O hydrogen bonds.

Entities:  

Year:  2013        PMID: 23634040      PMCID: PMC3629522          DOI: 10.1107/S1600536813005771

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of phenyl sulfonyl-containing compounds, see: De-Benedetti et al. (1985 ▶); Chumakov et al. (2006 ▶); Kremer et al. (2006 ▶). For related structures, see: Li et al. (2011 ▶); Sankar et al. (2012 ▶); Chakkaravarthi et al. (2008 ▶); Rodriguez et al. (1995 ▶). For graph-set analysis of hydrogen bonds, see: Sankar et al. (2012 ▶).

Experimental

Crystal data

C13H13BrO4S M = 345.20 Monoclinic, a = 27.883 (5) Å b = 6.001 (5) Å c = 17.256 (5) Å β = 94.020 (5)° V = 2880 (3) Å3 Z = 8 Mo Kα radiation μ = 3.01 mm−1 T = 293 K 0.32 × 0.20 × 0.10 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.972, T max = 0.992 14906 measured reflections 3479 independent reflections 2360 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.116 S = 1.01 3479 reflections 172 parameters H-atom parameters constrained Δρmax = 0.73 e Å−3 Δρmin = −0.41 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813005771/bt6881sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813005771/bt6881Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813005771/bt6881Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H13BrO4SF(000) = 1392
Mr = 345.20Dx = 1.592 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 5710 reflections
a = 27.883 (5) Åθ = 1.8–28.5°
b = 6.001 (5) ŵ = 3.01 mm1
c = 17.256 (5) ÅT = 293 K
β = 94.020 (5)°Monoclinic, colourless
V = 2880 (3) Å30.32 × 0.20 × 0.10 mm
Z = 8
Bruker APEXII CCD area-detector diffractometer3479 independent reflections
Radiation source: fine-focus sealed tube2360 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.035
ω and φ scansθmax = 28.1°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −35→36
Tmin = 0.972, Tmax = 0.992k = −7→7
14906 measured reflectionsl = −22→22
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.116H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0677P)2 + 0.4368P] where P = (Fo2 + 2Fc2)/3
3479 reflections(Δ/σ)max = 0.006
172 parametersΔρmax = 0.73 e Å3
0 restraintsΔρmin = −0.41 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.826326 (13)0.42424 (6)0.247333 (16)0.06505 (16)
S10.83626 (3)0.20959 (12)−0.06349 (4)0.0457 (2)
O10.84030 (9)0.4471 (3)−0.06892 (12)0.0624 (6)
O20.80643 (9)0.0904 (4)−0.12028 (12)0.0616 (6)
O31.04522 (10)−0.3791 (5)−0.07427 (19)0.0914 (9)
C70.89422 (11)0.0998 (5)−0.05976 (16)0.0494 (7)
H70.91900.1778−0.03310.059*
O41.01637 (8)−0.6642 (5)−0.14354 (16)0.0839 (8)
C100.96335 (12)−0.3814 (6)−0.1170 (2)0.0589 (8)
H100.9396−0.4653−0.14380.071*
C50.81767 (9)0.1422 (4)0.02920 (14)0.0398 (6)
C60.82704 (9)0.2916 (4)0.08969 (13)0.0411 (6)
H60.84140.42860.08150.049*
C40.79667 (11)−0.0622 (5)0.04048 (17)0.0520 (7)
H40.7913−0.1616−0.00060.062*
C80.90412 (11)−0.0915 (5)−0.09374 (16)0.0484 (7)
H80.8795−0.1664−0.12200.058*
C111.01207 (12)−0.4709 (6)−0.10820 (18)0.0582 (8)
C20.79283 (10)0.0286 (5)0.17491 (17)0.0507 (7)
H20.7845−0.00940.22450.061*
C10.81425 (10)0.2298 (5)0.16221 (14)0.0428 (6)
C30.78369 (12)−0.1169 (6)0.11396 (18)0.0585 (8)
H30.7687−0.25240.12230.070*
C90.95162 (11)−0.1879 (5)−0.08865 (16)0.0538 (8)
H90.9761−0.1053−0.06300.065*
C121.06419 (14)−0.7664 (9)−0.1426 (3)0.0987 (14)
H12A1.0883−0.6510−0.14600.118*
H12B1.0709−0.8463−0.09420.118*
C131.06654 (17)−0.9140 (9)−0.2053 (3)0.1135 (18)
H13B1.0979−0.9801−0.20390.170*
H13A1.0605−0.8342−0.25320.170*
H13C1.0428−1.0288−0.20170.170*
U11U22U33U12U13U23
Br10.0838 (3)0.0745 (3)0.03659 (18)0.00982 (17)0.00276 (15)−0.01125 (13)
S10.0591 (5)0.0479 (4)0.0299 (3)−0.0021 (3)0.0025 (3)0.0021 (3)
O10.0920 (17)0.0469 (13)0.0493 (12)0.0012 (11)0.0120 (11)0.0132 (9)
O20.0664 (14)0.0790 (16)0.0375 (10)−0.0003 (11)−0.0098 (9)−0.0063 (9)
O30.0638 (17)0.102 (2)0.105 (2)−0.0017 (15)−0.0198 (15)−0.0347 (17)
C70.0517 (18)0.0586 (19)0.0382 (14)−0.0134 (14)0.0044 (12)−0.0030 (12)
O40.0497 (14)0.0894 (18)0.110 (2)0.0094 (13)−0.0102 (13)−0.0372 (16)
C100.0491 (19)0.064 (2)0.0635 (19)−0.0077 (15)0.0030 (15)−0.0109 (15)
C50.0440 (15)0.0432 (14)0.0321 (12)−0.0003 (12)0.0023 (11)0.0022 (10)
C60.0452 (16)0.0418 (15)0.0364 (13)−0.0002 (12)0.0035 (11)0.0002 (11)
C40.0541 (19)0.0563 (19)0.0453 (15)−0.0129 (14)0.0024 (13)−0.0016 (13)
C80.0542 (18)0.0529 (17)0.0386 (14)−0.0084 (14)0.0065 (12)−0.0040 (12)
C110.052 (2)0.070 (2)0.0517 (17)−0.0072 (16)0.0005 (15)−0.0075 (15)
C20.0421 (17)0.068 (2)0.0425 (15)0.0031 (14)0.0089 (12)0.0115 (13)
C10.0410 (15)0.0531 (16)0.0341 (12)0.0095 (13)0.0009 (11)−0.0028 (11)
C30.059 (2)0.063 (2)0.0539 (18)−0.0192 (16)0.0038 (15)0.0145 (14)
C90.0539 (19)0.062 (2)0.0456 (15)−0.0123 (15)0.0076 (13)−0.0103 (14)
C120.053 (2)0.134 (4)0.107 (3)0.027 (2)−0.012 (2)−0.035 (3)
C130.081 (3)0.139 (5)0.121 (4)0.045 (3)0.013 (3)−0.007 (3)
Br1—C11.888 (3)C6—H60.9300
S1—O21.431 (2)C4—C31.382 (4)
S1—O11.433 (2)C4—H40.9300
S1—C71.742 (3)C8—C91.442 (4)
S1—C51.763 (2)C8—H80.9300
O3—C111.193 (4)C2—C11.371 (4)
C7—C81.327 (4)C2—C31.377 (5)
C7—H70.9300C2—H20.9300
O4—C111.320 (4)C3—H30.9300
O4—C121.467 (4)C9—H90.9300
C10—C91.310 (5)C12—C131.403 (6)
C10—C111.459 (5)C12—H12A0.9700
C10—H100.9300C12—H12B0.9700
C5—C41.379 (4)C13—H13B0.9600
C5—C61.387 (3)C13—H13A0.9600
C6—C11.376 (3)C13—H13C0.9600
O2—S1—O1119.77 (14)O3—C11—C10124.4 (3)
O2—S1—C7109.23 (14)O4—C11—C10112.9 (3)
O1—S1—C7107.56 (15)C1—C2—C3119.7 (3)
O2—S1—C5108.23 (13)C1—C2—H2120.2
O1—S1—C5108.47 (13)C3—C2—H2120.2
C7—S1—C5102.17 (13)C2—C1—C6121.8 (2)
C8—C7—S1122.1 (2)C2—C1—Br1118.4 (2)
C8—C7—H7118.9C6—C1—Br1119.8 (2)
S1—C7—H7118.9C2—C3—C4120.3 (3)
C11—O4—C12118.3 (3)C2—C3—H3119.9
C9—C10—C11122.9 (3)C4—C3—H3119.9
C9—C10—H10118.6C10—C9—C8125.8 (3)
C11—C10—H10118.6C10—C9—H9117.1
C4—C5—C6121.9 (2)C8—C9—H9117.1
C4—C5—S1119.1 (2)C13—C12—O4110.3 (3)
C6—C5—S1118.9 (2)C13—C12—H12A109.6
C1—C6—C5117.6 (2)O4—C12—H12A109.6
C1—C6—H6121.2C13—C12—H12B109.6
C5—C6—H6121.2O4—C12—H12B109.6
C5—C4—C3118.8 (3)H12A—C12—H12B108.1
C5—C4—H4120.6C12—C13—H13B109.5
C3—C4—H4120.6C12—C13—H13A109.5
C7—C8—C9122.6 (3)H13B—C13—H13A109.5
C7—C8—H8118.7C12—C13—H13C109.5
C9—C8—H8118.7H13B—C13—H13C109.5
O3—C11—O4122.7 (3)H13A—C13—H13C109.5
O2—S1—C7—C8−12.3 (3)C12—O4—C11—O3−1.7 (6)
O1—S1—C7—C8−143.8 (2)C12—O4—C11—C10176.8 (4)
C5—S1—C7—C8102.1 (3)C9—C10—C11—O30.8 (6)
O2—S1—C5—C428.0 (3)C9—C10—C11—O4−177.7 (3)
O1—S1—C5—C4159.4 (2)C3—C2—C1—C60.0 (4)
C7—S1—C5—C4−87.1 (3)C3—C2—C1—Br1−179.8 (2)
O2—S1—C5—C6−155.5 (2)C5—C6—C1—C2−0.2 (4)
O1—S1—C5—C6−24.1 (3)C5—C6—C1—Br1179.61 (19)
C7—S1—C5—C689.3 (2)C1—C2—C3—C41.0 (5)
C4—C5—C6—C1−0.5 (4)C5—C4—C3—C2−1.7 (5)
S1—C5—C6—C1−176.9 (2)C11—C10—C9—C8−178.6 (3)
C6—C5—C4—C31.5 (5)C7—C8—C9—C10176.0 (3)
S1—C5—C4—C3177.8 (2)C11—O4—C12—C13−156.5 (4)
S1—C7—C8—C9−177.7 (2)
D—H···AD—HH···AD···AD—H···A
C7—H7···O3i0.932.373.235 (4)154
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C7—H7⋯O3i 0.932.373.235 (4)154

Symmetry code: (i) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Copper complexes with heterocyclic sulfonamides: synthesis, spectroscopic characterization, microbiological and SOD-like activities: crystal structure of [Cu(sulfisoxazole)2(H2O)4] . 2H2O.

Authors:  E Kremer; G Facchin; E Estévez; P Alborés; E J Baran; J Ellena; M H Torre
Journal:  J Inorg Biochem       Date:  2006-03-06       Impact factor: 4.155

3.  (2-Methyl-1-phenyl-sulfonyl-1H-indol-3-yl)methanol.

Authors:  G Chakkaravarthi; V Dhayalan; A K Mohanakrishnan; V Manivannan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-01-30

4.  (2E,4E)-N-Benzyl-2-cyano-5-phenyl-penta-2,4-dienamide.

Authors:  Xin-Li Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-14

5.  (2E,4E)-Ethyl 5-(phenyl-sulfon-yl)penta-2,4-dienoate.

Authors:  Ulaganathan Sankar; V Sabari; G Suresh; Ramakrishnan Uma; S Aravindhan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-17

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.