Literature DB >> 23624664

Comprehensive macromolecular conformations mapped by quantitative SAXS analyses.

Greg L Hura, Helen Budworth, Kevin N Dyer, Robert P Rambo, Michal Hammel, Cynthia T McMurray, John A Tainer.   

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Year:  2013        PMID： 23624664      PMCID： PMC3728378          DOI： 10.1038/nmeth.2453

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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Review 2.  Mre11-Rad50-Nbs1 conformations and the control of sensing, signaling, and effector responses at DNA double-strand breaks.

Authors:  Gareth J Williams; Susan P Lees-Miller; John A Tainer
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3.  Crystal structure of the unliganded retinoblastoma protein pocket domain.

Authors:  Eva Rose M Balog; Jason R Burke; Greg L Hura; Seth M Rubin
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4.  Comments on the NIGMS PSI.

Authors:  Stephen C Harrison
Journal:  Structure       Date:  2007-11       Impact factor: 5.006

Review 5.  X-ray solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in solution.

Authors:  Christopher D Putnam; Michal Hammel; Greg L Hura; John A Tainer
Journal:  Q Rev Biophys       Date:  2007-08       Impact factor: 5.318

6.  Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corresponding native properties of templates.

Authors:  Yuedong Yang; Eshel Faraggi; Huiying Zhao; Yaoqi Zhou
Journal:  Bioinformatics       Date:  2011-06-11       Impact factor: 6.937

7.  Conformational trapping of mismatch recognition complex MSH2/MSH3 on repair-resistant DNA loops.

Authors:  Walter H Lang; Julie E Coats; Jerzy Majka; Greg L Hura; Yuyen Lin; Ivan Rasnik; Cynthia T McMurray
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-29       Impact factor: 11.205

8.  The nucleotide binding dynamics of human MSH2-MSH3 are lesion dependent.

Authors:  Barbara A L Owen; Walter H Lang; Cynthia T McMurray
Journal:  Nat Struct Mol Biol       Date:  2009-04-19       Impact factor: 15.369

9.  Mechanism of mismatch recognition revealed by human MutSβ bound to unpaired DNA loops.

Authors:  Shikha Gupta; Martin Gellert; Wei Yang
Journal:  Nat Struct Mol Biol       Date:  2011-12-18       Impact factor: 15.369

10.  Flipping of alkylated DNA damage bridges base and nucleotide excision repair.

Authors:  Julie L Tubbs; Vitaly Latypov; Sreenivas Kanugula; Amna Butt; Manana Melikishvili; Rolf Kraehenbuehl; Oliver Fleck; Andrew Marriott; Amanda J Watson; Barbara Verbeek; Gail McGown; Mary Thorncroft; Mauro F Santibanez-Koref; Christopher Millington; Andrew S Arvai; Matthew D Kroeger; Lisa A Peterson; David M Williams; Michael G Fried; Geoffrey P Margison; Anthony E Pegg; John A Tainer
Journal:  Nature       Date:  2009-06-11       Impact factor: 49.962
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  65 in total

1.  Small angle X-ray scattering and cross-linking for data assisted protein structure prediction in CASP 12 with prospects for improved accuracy.

Authors:  Tadeusz L Ogorzalek; Greg L Hura; Adam Belsom; Kathryn H Burnett; Andriy Kryshtafovych; John A Tainer; Juri Rappsilber; Susan E Tsutakawa; Krzysztof Fidelis
Journal:  Proteins       Date:  2018-02-07

2.  Conformational Plasticity of the Immunoglobulin Fc Domain in Solution.

Authors:  Soumya G Remesh; Anthony A Armstrong; Andrew D Mahan; Jinquan Luo; Michal Hammel
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3.  Accurate SAXS profile computation and its assessment by contrast variation experiments.

Authors:  Dina Schneidman-Duhovny; Michal Hammel; John A Tainer; Andrej Sali
Journal:  Biophys J       Date:  2013-08-20       Impact factor: 4.033

4.  DNA conformations in mismatch repair probed in solution by X-ray scattering from gold nanocrystals.

Authors:  Greg L Hura; Chi-Lin Tsai; Shelley A Claridge; Marc L Mendillo; Jessica M Smith; Gareth J Williams; Alexander J Mastroianni; A Paul Alivisatos; Christopher D Putnam; Richard D Kolodner; John A Tainer
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Review 5.  Structural insights into NHEJ: building up an integrated picture of the dynamic DSB repair super complex, one component and interaction at a time.

Authors:  Gareth J Williams; Michal Hammel; Sarvan Kumar Radhakrishnan; Dale Ramsden; Susan P Lees-Miller; John A Tainer
Journal:  DNA Repair (Amst)       Date:  2014-03-20

Review 6.  The MRE11-RAD50-NBS1 Complex Conducts the Orchestration of Damage Signaling and Outcomes to Stress in DNA Replication and Repair.

Authors:  Aleem Syed; John A Tainer
Journal:  Annu Rev Biochem       Date:  2018-04-25       Impact factor: 23.643

7.  Dynamic structures in DNA damage responses & cancer.

Authors:  John A Tainer
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8.  Determinants of human glucokinase activation and implications for small molecule allosteric control.

Authors:  Quinn Li; Lokesh Gakhar; M Ashley Spies
Journal:  Biochim Biophys Acta Gen Subj       Date:  2018-06-06       Impact factor: 3.770

9.  High-throughput SAXS for the characterization of biomolecules in solution: a practical approach.

Authors:  Kevin N Dyer; Michal Hammel; Robert P Rambo; Susan E Tsutakawa; Ivan Rodic; Scott Classen; John A Tainer; Greg L Hura
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10.  Broadly neutralizing epitopes in the Plasmodium vivax vaccine candidate Duffy Binding Protein.

Authors:  Edwin Chen; Nichole D Salinas; Yining Huang; Francis Ntumngia; Manolo D Plasencia; Michael L Gross; John H Adams; Niraj Harish Tolia
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