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Literature DB >> 23610370

Mendel: the Swiss army knife of genetic analysis programs.

Kenneth Lange¹, Jeanette C Papp, Janet S Sinsheimer, Ram Sripracha, Hua Zhou, Eric M Sobel.

Abstract

UNLABELLED: Mendel is one of the few statistical genetics packages that provide a full spectrum of gene mapping methods, ranging from parametric linkage in large pedigrees to genome-wide association with rare variants. Our latest additions to Mendel anticipate and respond to the needs of the genetics community. Compared with earlier versions, Mendel is faster and easier to use and has a wider range of applications. Supported platforms include Linux, MacOS and Windows. AVAILABILITY: Free from www.genetics.ucla.edu/software/mendel.

Mesh：

Year: 2013 PMID： 23610370 PMCID： PMC3673222 DOI： 10.1093/bioinformatics/btt187

Source DB: PubMed Journal: Bioinformatics ISSN： 1367-4803 Impact factor: 6.937

22 in total

1. Association screening of common and rare genetic variants by penalized regression.

Authors: Hua Zhou; Mary E Sehl; Janet S Sinsheimer; Kenneth Lange
Journal: Bioinformatics Date: 2010-08-06 Impact factor: 6.937

2. The pedigree trimming problem.

Authors: Kenneth Lange; Janet S Sinsheimer
Journal: Hum Hered Date: 2004 Impact factor: 0.444

3. Estimating ethnic admixture from pedigree data.

Authors: Janet S Sinsheimer; Christopher L Plaisier; Adriana Huertas-Vazquez; Carlos Aguilar-Salinas; Teresa Tusie-Luna; Päivi Pajukanta; Kenneth Lange
Journal: Am J Hum Genet Date: 2008-03 Impact factor: 11.025

4. A heterozygote-homozygote test of Hardy-Weinberg equilibrium.

Authors: Jin J Zhou; Kenneth Lange; Jeanette C Papp; Janet S Sinsheimer
Journal: Eur J Hum Genet Date: 2009-04-15 Impact factor: 4.246

5. Genome-wide association analysis by lasso penalized logistic regression.

Authors: Tong Tong Wu; Yi Fang Chen; Trevor Hastie; Eric Sobel; Kenneth Lange
Journal: Bioinformatics Date: 2009-01-28 Impact factor: 6.937

Review 6. Family-based designs for genome-wide association studies.

Authors: Jurg Ott; Yoichiro Kamatani; Mark Lathrop
Journal: Nat Rev Genet Date: 2011-06-01 Impact factor: 53.242

Review 7. Genome simulation approaches for synthesizing in silico datasets for human genomics.

Authors: Marylyn D Ritchie; William S Bush
Journal: Adv Genet Date: 2010 Impact factor: 1.944

8. Penalized regression for genome-wide association screening of sequence data.

Authors: H Zhou; D H Alexander; M E Sehl; J S Sinsheimer; E M Sobel; K Lange
Journal: Pac Symp Biocomput Date: 2011

9. Linkage analysis without defined pedigrees.

Authors: Aaron G Day-Williams; John Blangero; Thomas D Dyer; Kenneth Lange; Eric M Sobel
Journal: Genet Epidemiol Date: 2011-04-04 Impact factor: 2.135

10. Modeling maternal-offspring gene-gene interactions: the extended-MFG test.

Authors: Erica J Childs; Christina G S Palmer; Kenneth Lange; Janet S Sinsheimer
Journal: Genet Epidemiol Date: 2010-07 Impact factor: 2.135

63 in total

1. Family-specific aggregation of lipid GWAS variants confers the susceptibility to familial hypercholesterolemia in a large Austrian family.

Authors: Elina Nikkola; Arthur Ko; Marcus Alvarez; Rita M Cantor; Kristina Garske; Elliot Kim; Stephanie Gee; Alejandra Rodriguez; Reinhard Muxel; Niina Matikainen; Sanni Söderlund; Mahdi M Motazacker; Jan Borén; Claudia Lamina; Florian Kronenberg; Wolfgang J Schneider; Aarno Palotie; Markku Laakso; Marja-Riitta Taskinen; Päivi Pajukanta
Journal: Atherosclerosis Date: 2017-07-22 Impact factor: 5.162

2. A FAST ALGORITHM FOR DETECTING GENE-GENE INTERACTIONS IN GENOME-WIDE ASSOCIATION STUDIES.

Authors: Jiahan Li; Wei Zhong; Runze Li; Rongling Wu
Journal: Ann Appl Stat Date: 2014 Impact factor: 2.083

Review 3. Bias Correction Methods Explain Much of the Variation Seen in Breast Cancer Risks of BRCA1/2 Mutation Carriers.

Authors: Janet R Vos; Li Hsu; Richard M Brohet; Marian J E Mourits; Jakob de Vries; Kathleen E Malone; Jan C Oosterwijk; Geertruida H de Bock
Journal: J Clin Oncol Date: 2015-07-06 Impact factor: 44.544

4. Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.

Authors: Christopher A German; Janet S Sinsheimer; Yann C Klimentidis; Hua Zhou; Jin J Zhou
Journal: Genet Epidemiol Date: 2019-12-26 Impact factor: 2.135

5. Non-parametric estimation of survival in age-dependent genetic disease and application to the transthyretin-related hereditary amyloidosis.

Authors: Flora Alarcon; Violaine Planté-Bordeneuve; Malin Olsson; Grégory Nuel
Journal: PLoS One Date: 2018-09-25 Impact factor: 3.240

6. Iterative hard thresholding in genome-wide association studies: Generalized linear models, prior weights, and double sparsity.

Authors: Benjamin B Chu; Kevin L Keys; Christopher A German; Hua Zhou; Jin J Zhou; Eric M Sobel; Janet S Sinsheimer; Kenneth Lange
Journal: Gigascience Date: 2020-06-01 Impact factor: 6.524