Literature DB >> 15711090

The pedigree trimming problem.

Kenneth Lange1, Janet S Sinsheimer.   

Abstract

This report mathematically validates a fast algorithm for trimming irrelevant members from a pedigree. These individuals are typically dead or otherwise unavailable for study. Left in the pedigree, they slow likelihood evaluation. Of course, each pedigree of interest will have some core people who must be retained. The described algorithm retains just enough of the pedigree to maintain the proper relationships among the core people.

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Mesh:

Year:  2004        PMID: 15711090     DOI: 10.1159/000083031

Source DB:  PubMed          Journal:  Hum Hered        ISSN: 0001-5652            Impact factor:   0.444


  9 in total

1.  Detection of intergenerational genetic effects with application to HLA-B matching as a risk factor for schizophrenia.

Authors:  Erica J Childs; Eric M Sobel; Christina G S Palmer; Janet S Sinsheimer
Journal:  Hum Hered       Date:  2011-10-15       Impact factor: 0.444

2.  Estimating ethnic admixture from pedigree data.

Authors:  Janet S Sinsheimer; Christopher L Plaisier; Adriana Huertas-Vazquez; Carlos Aguilar-Salinas; Teresa Tusie-Luna; Päivi Pajukanta; Kenneth Lange
Journal:  Am J Hum Genet       Date:  2008-03       Impact factor: 11.025

3.  A heterozygote-homozygote test of Hardy-Weinberg equilibrium.

Authors:  Jin J Zhou; Kenneth Lange; Jeanette C Papp; Janet S Sinsheimer
Journal:  Eur J Hum Genet       Date:  2009-04-15       Impact factor: 4.246

4.  Mendel: the Swiss army knife of genetic analysis programs.

Authors:  Kenneth Lange; Jeanette C Papp; Janet S Sinsheimer; Ram Sripracha; Hua Zhou; Eric M Sobel
Journal:  Bioinformatics       Date:  2013-04-22       Impact factor: 6.937

5.  Modeling maternal-offspring gene-gene interactions: the extended-MFG test.

Authors:  Erica J Childs; Christina G S Palmer; Kenneth Lange; Janet S Sinsheimer
Journal:  Genet Epidemiol       Date:  2010-07       Impact factor: 2.135

6.  PedHunter 2.0 and its usage to characterize the founder structure of the Old Order Amish of Lancaster County.

Authors:  Woei-Jyh Lee; Toni I Pollin; Jeffrey R O'Connell; Richa Agarwala; Alejandro A Schäffer
Journal:  BMC Med Genet       Date:  2010-05-02       Impact factor: 2.103

7.  The Quantitative-MFG Test: A Linear Mixed Effect Model to Detect Maternal-Offspring Gene Interactions.

Authors:  Michelle M Clark; John Blangero; Thomas D Dyer; Eric M Sobel; Janet S Sinsheimer
Journal:  Ann Hum Genet       Date:  2015-11-15       Impact factor: 1.670

8.  The concerted impact of domestication and transposon insertions on methylation patterns between dogs and grey wolves.

Authors:  Ilana Janowitz Koch; Michelle M Clark; Michael J Thompson; Kerry A Deere-Machemer; Jun Wang; Lionel Duarte; Gitanjali E Gnanadesikan; Eskender L McCoy; Liudmilla Rubbi; Daniel R Stahler; Matteo Pellegrini; Elaine A Ostrander; Robert K Wayne; Janet S Sinsheimer; Bridgett M vonHoldt
Journal:  Mol Ecol       Date:  2016-01-18       Impact factor: 6.185

9.  Using the maternal-fetal genotype incompatibility test to assess non-inherited maternal HLA-DRB1 antigen coding alleles as rheumatoid arthritis risk factors.

Authors:  Hsin-Ju Hsieh; Christina G S Palmer; Sinead Harney; Hsiu-Wen Chen; Lara Bauman; Matthew A Brown; Janet S Sinsheimer
Journal:  BMC Proc       Date:  2007-12-18
  9 in total

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