Literature DB >> 23597482

Gene regulatory networks governing pancreas development.

H Efsun Arda1, Cecil M Benitez, Seung K Kim.   

Abstract

Elucidation of cellular and gene regulatory networks (GRNs) governing organ development will accelerate progress toward tissue replacement. Here, we have compiled reference GRNs underlying pancreas development from data mining that integrates multiple approaches, including mutant analysis, lineage tracing, cell purification, gene expression and enhancer analysis, and biochemical studies of gene regulation. Using established computational tools, we integrated and represented these networks in frameworks that should enhance understanding of the surging output of genomic-scale genetic and epigenetic studies of pancreas development and diseases such as diabetes and pancreatic cancer. We envision similar approaches would be useful for understanding the development of other organs.
Copyright © 2013 Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23597482      PMCID: PMC3645877          DOI: 10.1016/j.devcel.2013.03.016

Source DB:  PubMed          Journal:  Dev Cell        ISSN: 1534-5807            Impact factor:   12.270


  77 in total

1.  Pancreatic β cell identity is maintained by DNA methylation-mediated repression of Arx.

Authors:  Sangeeta Dhawan; Senta Georgia; Shuen-Ing Tschen; Guoping Fan; Anil Bhushan
Journal:  Dev Cell       Date:  2011-04-19       Impact factor: 12.270

2.  Transcriptomes of the major human pancreatic cell types.

Authors:  C Dorrell; J Schug; C F Lin; P S Canaday; A J Fox; O Smirnova; R Bonnah; P R Streeter; C J Stoeckert; K H Kaestner; M Grompe
Journal:  Diabetologia       Date:  2011-09-01       Impact factor: 10.122

Review 3.  Synthetic biology moving into the clinic.

Authors:  Warren C Ruder; Ting Lu; James J Collins
Journal:  Science       Date:  2011-09-02       Impact factor: 47.728

4.  Context-specific α- to-β-cell reprogramming by forced Pdx1 expression.

Authors:  Yu-Ping Yang; Fabrizio Thorel; Daniel F Boyer; Pedro L Herrera; Christopher V E Wright
Journal:  Genes Dev       Date:  2011-08-15       Impact factor: 11.361

5.  Ngn3(+) endocrine progenitor cells control the fate and morphogenesis of pancreatic ductal epithelium.

Authors:  Judith Magenheim; Allon M Klein; Ben Z Stanger; Ruth Ashery-Padan; Beatriz Sosa-Pineda; Guoqiang Gu; Yuval Dor
Journal:  Dev Biol       Date:  2011-08-17       Impact factor: 3.582

Review 6.  MafA and MafB activity in pancreatic β cells.

Authors:  Yan Hang; Roland Stein
Journal:  Trends Endocrinol Metab       Date:  2011-06-28       Impact factor: 12.015

7.  Islet-1 regulates Arx transcription during pancreatic islet alpha-cell development.

Authors:  Jingxuan Liu; Chad S Hunter; Aiping Du; Benjamin Ediger; Erik Walp; Johanna Murray; Roland Stein; Catherine Lee May
Journal:  J Biol Chem       Date:  2011-03-09       Impact factor: 5.157

8.  Chromatin "prepattern" and histone modifiers in a fate choice for liver and pancreas.

Authors:  Cheng-Ran Xu; Philip A Cole; David J Meyers; Jay Kormish; Sharon Dent; Kenneth S Zaret
Journal:  Science       Date:  2011-05-20       Impact factor: 47.728

9.  PDGF signalling controls age-dependent proliferation in pancreatic β-cells.

Authors:  Hainan Chen; Xueying Gu; Yinghua Liu; Jing Wang; Stacey E Wirt; Rita Bottino; Hubert Schorle; Julien Sage; Seung K Kim
Journal:  Nature       Date:  2011-10-12       Impact factor: 49.962

10.  Arx and Nkx2.2 compound deficiency redirects pancreatic alpha- and beta-cell differentiation to a somatostatin/ghrelin co-expressing cell lineage.

Authors:  Simon Kordowich; Patrick Collombat; Ahmed Mansouri; Palle Serup
Journal:  BMC Dev Biol       Date:  2011-08-31       Impact factor: 1.978

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  75 in total

1.  Converting Adult Pancreatic Islet α Cells into β Cells by Targeting Both Dnmt1 and Arx.

Authors:  Harini Chakravarthy; Xueying Gu; Martin Enge; Xiaoqing Dai; Yong Wang; Nicolas Damond; Carolina Downie; Kathy Liu; Jing Wang; Yuan Xing; Simona Chera; Fabrizio Thorel; Stephen Quake; Jose Oberholzer; Patrick E MacDonald; Pedro L Herrera; Seung K Kim
Journal:  Cell Metab       Date:  2017-02-16       Impact factor: 27.287

2.  Global transcription network incorporating distal regulator binding reveals selective cooperation of cancer drivers and risk genes.

Authors:  Kwoneel Kim; Woojin Yang; Kang Seon Lee; Hyoeun Bang; Kiwon Jang; Sang Cheol Kim; Jin Ok Yang; Seongjin Park; Kiejung Park; Jung Kyoon Choi
Journal:  Nucleic Acids Res       Date:  2015-05-22       Impact factor: 16.971

3.  A direct fate exclusion mechanism by Sonic hedgehog-regulated transcriptional repressors.

Authors:  Yuichi Nishi; Xiaoxiao Zhang; Jieun Jeong; Kevin A Peterson; Anastasia Vedenko; Martha L Bulyk; Winston A Hide; Andrew P McMahon
Journal:  Development       Date:  2015-08-20       Impact factor: 6.868

Review 4.  In vitro differentiation and expansion of human pluripotent stem cell-derived pancreatic progenitors.

Authors:  Jolanta Chmielowiec; Malgorzata Borowiak
Journal:  Rev Diabet Stud       Date:  2014-05-10

5.  Parallel evolution of male germline epigenetic poising and somatic development in animals.

Authors:  Bluma J Lesch; Sherman J Silber; John R McCarrey; David C Page
Journal:  Nat Genet       Date:  2016-06-13       Impact factor: 38.330

6.  A Chromatin Basis for Cell Lineage and Disease Risk in the Human Pancreas.

Authors:  H Efsun Arda; Jennifer Tsai; Yenny R Rosli; Paul Giresi; Rita Bottino; William J Greenleaf; Howard Y Chang; Seung K Kim
Journal:  Cell Syst       Date:  2018-08-22       Impact factor: 10.304

7.  PAX6 maintains β cell identity by repressing genes of alternative islet cell types.

Authors:  Avital Swisa; Dana Avrahami; Noa Eden; Jia Zhang; Eseye Feleke; Tehila Dahan; Yamit Cohen-Tayar; Miri Stolovich-Rain; Klaus H Kaestner; Benjamin Glaser; Ruth Ashery-Padan; Yuval Dor
Journal:  J Clin Invest       Date:  2016-12-12       Impact factor: 14.808

8.  Pdx1 regulates pancreas tubulogenesis and E-cadherin expression.

Authors:  Leilani Marty-Santos; Ondine Cleaver
Journal:  Development       Date:  2015-12-10       Impact factor: 6.868

Review 9.  Histamine regulation of pancreatitis and pancreatic cancer: a review of recent findings.

Authors:  Taylor Francis; Allyson Graf; Kyle Hodges; Lindsey Kennedy; Laura Hargrove; Mattie Price; Kate Kearney; Heather Francis
Journal:  Hepatobiliary Surg Nutr       Date:  2013-08       Impact factor: 7.293

10.  Age-Dependent Pancreatic Gene Regulation Reveals Mechanisms Governing Human β Cell Function.

Authors:  H Efsun Arda; Lingyu Li; Jennifer Tsai; Eduardo A Torre; Yenny Rosli; Heshan Peiris; Robert C Spitale; Chunhua Dai; Xueying Gu; Kun Qu; Pei Wang; Jing Wang; Markus Grompe; Raphael Scharfmann; Michael S Snyder; Rita Bottino; Alvin C Powers; Howard Y Chang; Seung K Kim
Journal:  Cell Metab       Date:  2016-04-28       Impact factor: 27.287

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