Literature DB >> 23594741

Genomics: Zebrafish earns its stripes.

Alexander F Schier.   

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Year:  2013        PMID: 23594741     DOI: 10.1038/nature12094

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


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  12 in total

Review 1.  In vivo drug discovery in the zebrafish.

Authors:  Leonard I Zon; Randall T Peterson
Journal:  Nat Rev Drug Discov       Date:  2005-01       Impact factor: 84.694

2.  TALEN-mediated precise genome modification by homologous recombination in zebrafish.

Authors:  Yao Zu; Xiangjun Tong; Zhanxiang Wang; Da Liu; Ruochuan Pan; Zhe Li; Yingying Hu; Zhou Luo; Peng Huang; Qian Wu; Zuoyan Zhu; Bo Zhang; Shuo Lin
Journal:  Nat Methods       Date:  2013-02-24       Impact factor: 28.547

3.  The zebrafish reference genome sequence and its relationship to the human genome.

Authors:  Kerstin Howe; Matthew D Clark; Carlos F Torroja; James Torrance; Camille Berthelot; Matthieu Muffato; John E Collins; Sean Humphray; Karen McLaren; Lucy Matthews; Stuart McLaren; Ian Sealy; Mario Caccamo; Carol Churcher; Carol Scott; Jeffrey C Barrett; Romke Koch; Gerd-Jörg Rauch; Simon White; William Chow; Britt Kilian; Leonor T Quintais; José A Guerra-Assunção; Yi Zhou; Yong Gu; Jennifer Yen; Jan-Hinnerk Vogel; Tina Eyre; Seth Redmond; Ruby Banerjee; Jianxiang Chi; Beiyuan Fu; Elizabeth Langley; Sean F Maguire; Gavin K Laird; David Lloyd; Emma Kenyon; Sarah Donaldson; Harminder Sehra; Jeff Almeida-King; Jane Loveland; Stephen Trevanion; Matt Jones; Mike Quail; Dave Willey; Adrienne Hunt; John Burton; Sarah Sims; Kirsten McLay; Bob Plumb; Joy Davis; Chris Clee; Karen Oliver; Richard Clark; Clare Riddle; David Elliot; David Eliott; Glen Threadgold; Glenn Harden; Darren Ware; Sharmin Begum; Beverley Mortimore; Beverly Mortimer; Giselle Kerry; Paul Heath; Benjamin Phillimore; Alan Tracey; Nicole Corby; Matthew Dunn; Christopher Johnson; Jonathan Wood; Susan Clark; Sarah Pelan; Guy Griffiths; Michelle Smith; Rebecca Glithero; Philip Howden; Nicholas Barker; Christine Lloyd; Christopher Stevens; Joanna Harley; Karen Holt; Georgios Panagiotidis; Jamieson Lovell; Helen Beasley; Carl Henderson; Daria Gordon; Katherine Auger; Deborah Wright; Joanna Collins; Claire Raisen; Lauren Dyer; Kenric Leung; Lauren Robertson; Kirsty Ambridge; Daniel Leongamornlert; Sarah McGuire; Ruth Gilderthorp; Coline Griffiths; Deepa Manthravadi; Sarah Nichol; Gary Barker; Siobhan Whitehead; Michael Kay; Jacqueline Brown; Clare Murnane; Emma Gray; Matthew Humphries; Neil Sycamore; Darren Barker; David Saunders; Justene Wallis; Anne Babbage; Sian Hammond; Maryam Mashreghi-Mohammadi; Lucy Barr; Sancha Martin; Paul Wray; Andrew Ellington; Nicholas Matthews; Matthew Ellwood; Rebecca Woodmansey; Graham Clark; James D Cooper; James Cooper; Anthony Tromans; Darren Grafham; Carl Skuce; Richard Pandian; Robert Andrews; Elliot Harrison; Andrew Kimberley; Jane Garnett; Nigel Fosker; Rebekah Hall; Patrick Garner; Daniel Kelly; Christine Bird; Sophie Palmer; Ines Gehring; Andrea Berger; Christopher M Dooley; Zübeyde Ersan-Ürün; Cigdem Eser; Horst Geiger; Maria Geisler; Lena Karotki; Anette Kirn; Judith Konantz; Martina Konantz; Martina Oberländer; Silke Rudolph-Geiger; Mathias Teucke; Christa Lanz; Günter Raddatz; Kazutoyo Osoegawa; Baoli Zhu; Amanda Rapp; Sara Widaa; Cordelia Langford; Fengtang Yang; Stephan C Schuster; Nigel P Carter; Jennifer Harrow; Zemin Ning; Javier Herrero; Steve M J Searle; Anton Enright; Robert Geisler; Ronald H A Plasterk; Charles Lee; Monte Westerfield; Pieter J de Jong; Leonard I Zon; John H Postlethwait; Christiane Nüsslein-Volhard; Tim J P Hubbard; Hugues Roest Crollius; Jane Rogers; Derek L Stemple
Journal:  Nature       Date:  2013-04-17       Impact factor: 49.962

4.  Efficient recovery of ENU-induced mutations from the zebrafish germline.

Authors:  L Solnica-Krezel; A F Schier; W Driever
Journal:  Genetics       Date:  1994-04       Impact factor: 4.562

5.  A genetic screen for mutations affecting embryogenesis in zebrafish.

Authors:  W Driever; L Solnica-Krezel; A F Schier; S C Neuhauss; J Malicki; D L Stemple; D Y Stainier; F Zwartkruis; S Abdelilah; Z Rangini; J Belak; C Boggs
Journal:  Development       Date:  1996-12       Impact factor: 6.868

6.  A large-scale zebrafish gene knockout resource for the genome-wide study of gene function.

Authors:  Gaurav K Varshney; Jing Lu; Derek E Gildea; Haigen Huang; Wuhong Pei; Zhongan Yang; Sunny C Huang; David Schoenfeld; Nam H Pho; David Casero; Takashi Hirase; Deborah Mosbrook-Davis; Suiyuan Zhang; Li-En Jao; Bo Zhang; Ian G Woods; Steven Zimmerman; Alexander F Schier; Tyra G Wolfsberg; Matteo Pellegrini; Shawn M Burgess; Shuo Lin
Journal:  Genome Res       Date:  2013-02-04       Impact factor: 9.043

7.  Genome editing with RNA-guided Cas9 nuclease in zebrafish embryos.

Authors:  Nannan Chang; Changhong Sun; Lu Gao; Dan Zhu; Xiufei Xu; Xiaojun Zhu; Jing-Wei Xiong; Jianzhong Jeff Xi
Journal:  Cell Res       Date:  2013-03-26       Impact factor: 25.617

8.  Efficient genome editing in zebrafish using a CRISPR-Cas system.

Authors:  Woong Y Hwang; Yanfang Fu; Deepak Reyon; Morgan L Maeder; Shengdar Q Tsai; Jeffry D Sander; Randall T Peterson; J-R Joanna Yeh; J Keith Joung
Journal:  Nat Biotechnol       Date:  2013-01-29       Impact factor: 54.908

9.  In vivo genome editing using a high-efficiency TALEN system.

Authors:  Victoria M Bedell; Ying Wang; Jarryd M Campbell; Tanya L Poshusta; Colby G Starker; Randall G Krug; Wenfang Tan; Sumedha G Penheiter; Alvin C Ma; Anskar Y H Leung; Scott C Fahrenkrug; Daniel F Carlson; Daniel F Voytas; Karl J Clark; Jeffrey J Essner; Stephen C Ekker
Journal:  Nature       Date:  2012-09-23       Impact factor: 49.962

10.  A systematic genome-wide analysis of zebrafish protein-coding gene function.

Authors:  Ross N W Kettleborough; Elisabeth M Busch-Nentwich; Steven A Harvey; Christopher M Dooley; Ewart de Bruijn; Freek van Eeden; Ian Sealy; Richard J White; Colin Herd; Isaac J Nijman; Fruzsina Fényes; Selina Mehroke; Catherine Scahill; Richard Gibbons; Neha Wali; Samantha Carruthers; Amanda Hall; Jennifer Yen; Edwin Cuppen; Derek L Stemple
Journal:  Nature       Date:  2013-04-17       Impact factor: 49.962

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  12 in total

Review 1.  Transcriptional analysis of endocrine disruption using zebrafish and massively parallel sequencing.

Authors:  Michael E Baker; Gary Hardiman
Journal:  J Mol Endocrinol       Date:  2014-06       Impact factor: 5.098

2.  Zebrafish embryos as in vivo test tubes to unravel cell-specific mechanisms of neurogenesis during neurodevelopment and in diseases.

Authors:  Éric Samarut
Journal:  Neurogenesis (Austin)       Date:  2016-10-07

3.  Spatial reconstruction of single-cell gene expression data.

Authors:  Rahul Satija; Jeffrey A Farrell; David Gennert; Alexander F Schier; Aviv Regev
Journal:  Nat Biotechnol       Date:  2015-04-13       Impact factor: 54.908

Review 4.  Studying Autophagy in Zebrafish.

Authors:  Benan John Mathai; Annemarie H Meijer; Anne Simonsen
Journal:  Cells       Date:  2017-07-09       Impact factor: 6.600

5.  Toxicity Evaluation and Biomarker Selection with Validated Reference Gene in Embryonic Zebrafish Exposed to Mitoxantrone.

Authors:  Lili Liu; Hua Zhu; Yanchun Yan; Peng Lv; Wei Wu
Journal:  Int J Mol Sci       Date:  2018-11-08       Impact factor: 5.923

6.  Zebrafish Xenograft Model of Human Lung Cancer for Evaluating Osimertinib Resistance.

Authors:  Xin-Ying Li; Li-Tang Huang; Jia-Qi Wu; Ming-Fang He; Su-Hua Zhu; Ping Zhan; Tang-Feng Lv; Yong Song
Journal:  Biomed Res Int       Date:  2019-06-27       Impact factor: 3.411

Review 7.  Advances in genomics of bony fish.

Authors:  Herman P Spaink; Hans J Jansen; Ron P Dirks
Journal:  Brief Funct Genomics       Date:  2013-11-29       Impact factor: 4.241

8.  Standardized Welfare Terms for the Zebrafish Community.

Authors:  Nicola Goodwin; Natasha A Karp; Samuel Blackledge; Bradley Clark; Rosemary Keeble; Ceri Kovacs; Katrina N Murray; Michael Price; Peter Thompson; James Bussell
Journal:  Zebrafish       Date:  2016-04-20       Impact factor: 1.985

9.  Atlantic salmon cardiac primary cultures: An in vitro model to study viral host pathogen interactions and pathogenesis.

Authors:  Patricia A Noguera; Bianka Grunow; Matthias Klinger; Katherine Lester; Bertrand Collet; Jorge Del-Pozo
Journal:  PLoS One       Date:  2017-07-20       Impact factor: 3.240

10.  A novel metabolism-based phenotypic drug discovery platform in zebrafish uncovers HDACs 1 and 3 as a potential combined anti-seizure drug target.

Authors:  Kingsley Ibhazehiebo; Cezar Gavrilovici; Cristiane L de la Hoz; Shun-Chieh Ma; Renata Rehak; Gaurav Kaushik; Paola L Meza Santoscoy; Lucas Scott; Nandan Nath; Do-Young Kim; Jong M Rho; Deborah M Kurrasch
Journal:  Brain       Date:  2018-03-01       Impact factor: 13.501

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