Literature DB >> 24850832

Transcriptional analysis of endocrine disruption using zebrafish and massively parallel sequencing.

Michael E Baker1, Gary Hardiman2.   

Abstract

Endocrine-disrupting chemicals (EDCs), including plasticizers, pesticides, detergents, and pharmaceuticals, affect a variety of hormone-regulated physiological pathways in humans and wildlife. Many EDCs are lipophilic molecules and bind to hydrophobic pockets in steroid receptors, such as the estrogen receptor and androgen receptor, which are important in vertebrate reproduction and development. Indeed, health effects attributed to EDCs include reproductive dysfunction (e.g. reduced fertility, reproductive tract abnormalities, and skewed male:female sex ratios in fish), early puberty, various cancers, and obesity. A major concern is the effects of exposure to low concentrations of endocrine disruptors in utero and post partum, which may increase the incidence of cancer and diabetes in adults. EDCs affect transcription of hundreds and even thousands of genes, which has created the need for new tools to monitor the global effects of EDCs. The emergence of massive parallel sequencing for investigating gene transcription provides a sensitive tool for monitoring the effects of EDCs on humans and other vertebrates, as well as elucidating the mechanism of action of EDCs. Zebrafish conserve many developmental pathways found in humans, which makes zebrafish a valuable model system for studying EDCs, especially on early organ development because their embryos are translucent. In this article, we review recent advances in massive parallel sequencing approaches with a focus on zebrafish. We make the case that zebrafish exposed to EDCs at different stages of development can provide important insights on EDC effects on human health.
© 2014 Society for Endocrinology.

Entities:  

Keywords:  endocrine disruptors; massive parallel sequencing; steroid receptors; zebrafish

Mesh:

Substances:

Year:  2014        PMID: 24850832      PMCID: PMC4145605          DOI: 10.1530/JME-13-0219

Source DB:  PubMed          Journal:  J Mol Endocrinol        ISSN: 0952-5041            Impact factor:   5.098


  140 in total

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Review 4.  Parturition.

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Review 7.  Exposure and effects assessment of persistent organohalogen contaminants in arctic wildlife and fish.

Authors:  Robert J Letcher; Jan Ove Bustnes; Rune Dietz; Bjørn M Jenssen; Even H Jørgensen; Christian Sonne; Jonathan Verreault; Mathilakath M Vijayan; Geir W Gabrielsen
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8.  Genome-wide mapping of in vivo protein-DNA interactions.

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Authors:  Sergey Koren; Michael C Schatz; Brian P Walenz; Jeffrey Martin; Jason T Howard; Ganeshkumar Ganapathy; Zhong Wang; David A Rasko; W Richard McCombie; Erich D Jarvis
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Authors:  Kenneth G Frey; Jesus Enrique Herrera-Galeano; Cassie L Redden; Truong V Luu; Stephanie L Servetas; Alfred J Mateczun; Vishwesh P Mokashi; Kimberly A Bishop-Lilly
Journal:  BMC Genomics       Date:  2014-02-04       Impact factor: 3.969

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Review 1.  Use of Zebrafish in Drug Discovery Toxicology.

Authors:  Steven Cassar; Isaac Adatto; Jennifer L Freeman; Joshua T Gamse; Iñaki Iturria; Christian Lawrence; Arantza Muriana; Randall T Peterson; Steven Van Cruchten; Leonard I Zon
Journal:  Chem Res Toxicol       Date:  2019-11-16       Impact factor: 3.739

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Authors:  Ludivine Renaud; Willian A da Silveira; E Starr Hazard; Jonathan Simpson; Silvia Falcinelli; Dongjun Chung; Oliana Carnevali; Gary Hardiman
Journal:  Genes (Basel)       Date:  2017-10-13       Impact factor: 4.096

3.  miRNA and lncRNA Expression Networks Modulate Cell Cycle and DNA Repair Inhibition in Senescent Prostate Cells.

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Journal:  Genes (Basel)       Date:  2022-01-24       Impact factor: 4.096

4.  META-ANALYSIS OF DOLPHIN AND HUMAN PERIPHERAL BLOOD MONONUCLEAR CELLS REVEALS INFLAMMATORY SIGNATURES ASSOCIATED WITH EXPOSURE TO HIGH LEVELS OF PERFLUOROALKYL SUBSTANCES.

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5.  Systems Analysis of the Liver Transcriptome in Adult Male Zebrafish Exposed to the Plasticizer (2-Ethylhexyl) Phthalate (DEHP).

Authors:  Matthew Huff; Willian A da Silveira; Oliana Carnevali; Ludivine Renaud; Gary Hardiman
Journal:  Sci Rep       Date:  2018-02-01       Impact factor: 4.379

6.  De Novo Hepatic Transcriptome Assembly and Systems Level Analysis of Three Species of Dietary Fish, Sardinops sagax, Scomber japonicus, and Pleuronichthys verticalis.

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Journal:  Genes (Basel)       Date:  2018-10-25       Impact factor: 4.096

7.  Interplay Between MicroRNAs and Targeted Genes in Cellular Homeostasis of Adult Zebrafish (Danio rerio).

Authors:  Ludivine Renaud; Willian A da Silveira; William B Glen; Edward S Hazard; Gary Hardiman
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  7 in total

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