Literature DB >> 23586937

Solid-state NMR-based approaches for supramolecular structure elucidation.

Markus Weingarth1, Marc Baldus.   

Abstract

Supramolecular chemistry provides structural and conformational information about complexes formed from multiple molecules. While the molecule is held together by strong intramolecular contacts like covalent bonds, supramolecular structures can be further stabilized by weaker or transient intermolecular interactions. These interactions can confer a great diversity and sensitivity to exogenous factors like temperature, pressure, or ionic strength to multimolecular arrangements. Solid-state nuclear magnetic resonance (ssNMR) can provide atomic-scale structural and dynamical information in highly disordered or heterogeneous biological systems, even in complex environments such as cellular membranes or whole cells. In these systems, the molecule of interest no longer exists as a separate unit, but it entangles with its surroundings in a dynamic interplay. Researchers have long accounted for the complexity of these intermolecular arrangements through a rather phenomenological description. But now the focus is shifting toward a detailed understanding of supramolecular structure at atomic resolution, constantly expanding our understanding of the stunning influence of the environment. In this Account, we discuss how ssNMR can help to dissect the remarkable interplay between intra- and intermolecular interactions. We describe biochemical and spectroscopic strategies that tailor ssNMR spectroscopic methods to the challenge of supramolecular structure investigation. In particular, we consider protein-protein interactions or the protein-membrane topology, and we review recent applications of these techniques. Furthermore, we summarize methods for integrating ssNMR information with other experimental techniques or computational methods, and we offer perspectives on how this overall information allows us to target increasingly large and intricate supramolecular structures of biomolecules. Advancements in ssNMR methodology and instrumentation, including the incorporation of signal enhancement methods such as dynamic nuclear polarization will further increase the potential of ssNMR spectroscopy, and together with additional developments in the field of NMR-hybrid strategies, ssNMR may become an ideal tool to study the heterogeneous, dynamic, and often transient nature of molecular interactions in complex biological systems.

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Year:  2013        PMID: 23586937     DOI: 10.1021/ar300316e

Source DB:  PubMed          Journal:  Acc Chem Res        ISSN: 0001-4842            Impact factor:   22.384


  30 in total

1.  Molecular Rationale for Improved Dynamic Nuclear Polarization of Biomembranes.

Authors:  Adam N Smith; Umar T Twahir; Thierry Dubroca; Gail E Fanucci; Joanna R Long
Journal:  J Phys Chem B       Date:  2016-08-04       Impact factor: 2.991

2.  Efficient band-selective homonuclear CO-CA cross-polarization in protonated proteins.

Authors:  Veniamin Chevelkov; Chaowei Shi; Hannes Klaus Fasshuber; Stefan Becker; Adam Lange
Journal:  J Biomol NMR       Date:  2013-08-08       Impact factor: 2.835

3.  SedNMR: a web tool for optimizing sedimentation of macromolecular solutes for SSNMR.

Authors:  Lucio Ferella; Claudio Luchinat; Enrico Ravera; Antonio Rosato
Journal:  J Biomol NMR       Date:  2013-11-17       Impact factor: 2.835

Review 4.  X-ray crystallography over the past decade for novel drug discovery - where are we heading next?

Authors:  Heping Zheng; Katarzyna B Handing; Matthew D Zimmerman; Ivan G Shabalin; Steven C Almo; Wladek Minor
Journal:  Expert Opin Drug Discov       Date:  2015-07-15       Impact factor: 6.098

Review 5.  Structural biology of supramolecular assemblies by magic-angle spinning NMR spectroscopy.

Authors:  Caitlin M Quinn; Tatyana Polenova
Journal:  Q Rev Biophys       Date:  2017-01       Impact factor: 5.318

6.  The development of solid-state NMR of membrane proteins.

Authors:  Stanley J Opella
Journal:  Biomed Spectrosc Imaging       Date:  2014

7.  Membrane interactions of phylloseptin-1, -2, and -3 peptides by oriented solid-state NMR spectroscopy.

Authors:  Jarbas M Resende; Rodrigo M Verly; Christopher Aisenbrey; Amary Cesar; Philippe Bertani; Dorila Piló-Veloso; Burkhard Bechinger
Journal:  Biophys J       Date:  2014-08-19       Impact factor: 4.033

8.  Solid state NMR chemical shift assignment and conformational analysis of a cellulose binding protein facilitated by optimized glycerol enrichment.

Authors:  Hadar Ivanir; Amir Goldbourt
Journal:  J Biomol NMR       Date:  2014-05-14       Impact factor: 2.835

9.  Solid-State NMR Studies Reveal Native-like β-Sheet Structures in Transthyretin Amyloid.

Authors:  Kwang Hun Lim; Anvesh K R Dasari; Ivan Hung; Zhehong Gan; Jeffery W Kelly; Peter E Wright; David E Wemmer
Journal:  Biochemistry       Date:  2016-09-07       Impact factor: 3.162

10.  Ca(2+) ATPase Conformational Transitions in Lipid Bilayers Mapped by Site-directed Ethylation and Solid-State NMR.

Authors:  Vitaly V Vostrikov; Martin Gustavsson; Tata Gopinath; Dan Mullen; Alysha A Dicke; Vincent Truong; Gianluigi Veglia
Journal:  ACS Chem Biol       Date:  2015-12-18       Impact factor: 5.100

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