Literature DB >> 23561011

Accurate first principles model potentials for intermolecular interactions.

Mark S Gordon1, Quentin A Smith, Peng Xu, Lyudmila V Slipchenko.   

Abstract

The general effective fragment potential (EFP) method provides model potentials for any molecule that is derived from first principles, with no empirically fitted parameters. The EFP method has been interfaced with most currently used ab initio single-reference and multireference quantum mechanics (QM) methods, ranging from Hartree-Fock and coupled cluster theory to multireference perturbation theory. The most recent innovations in the EFP model have been to make the computationally expensive charge transfer term much more efficient and to interface the general EFP dispersion and exchange repulsion interactions with QM methods. Following a summary of the method and its implementation in generally available computer programs, these most recent new developments are discussed.

Mesh:

Substances:

Year:  2013        PMID: 23561011     DOI: 10.1146/annurev-physchem-040412-110031

Source DB:  PubMed          Journal:  Annu Rev Phys Chem        ISSN: 0066-426X            Impact factor:   12.703


  13 in total

Review 1.  Vibrational Spectroscopic Map, Vibrational Spectroscopy, and Intermolecular Interaction.

Authors:  Carlos R Baiz; Bartosz Błasiak; Jens Bredenbeck; Minhaeng Cho; Jun-Ho Choi; Steven A Corcelli; Arend G Dijkstra; Chi-Jui Feng; Sean Garrett-Roe; Nien-Hui Ge; Magnus W D Hanson-Heine; Jonathan D Hirst; Thomas L C Jansen; Kijeong Kwac; Kevin J Kubarych; Casey H Londergan; Hiroaki Maekawa; Mike Reppert; Shinji Saito; Santanu Roy; James L Skinner; Gerhard Stock; John E Straub; Megan C Thielges; Keisuke Tominaga; Andrei Tokmakoff; Hajime Torii; Lu Wang; Lauren J Webb; Martin T Zanni
Journal:  Chem Rev       Date:  2020-06-29       Impact factor: 60.622

2.  AMOEBA+ Classical Potential for Modeling Molecular Interactions.

Authors:  Chengwen Liu; Jean-Philip Piquemal; Pengyu Ren
Journal:  J Chem Theory Comput       Date:  2019-06-11       Impact factor: 6.006

3.  Perspective: Quantum mechanical methods in biochemistry and biophysics.

Authors:  Qiang Cui
Journal:  J Chem Phys       Date:  2016-10-14       Impact factor: 3.488

4.  Polarizable embedding for simulating redox potentials of biomolecules.

Authors:  Ruslan N Tazhigulov; Pradeep Kumar Gurunathan; Yongbin Kim; Lyudmila V Slipchenko; Ksenia B Bravaya
Journal:  Phys Chem Chem Phys       Date:  2019-06-05       Impact factor: 3.676

5.  Numerical study on the partitioning of the molecular polarizability into fluctuating charge and induced atomic dipole contributions.

Authors:  Ye Mei; Andrew C Simmonett; Frank C Pickard; Robert A DiStasio; Bernard R Brooks; Yihan Shao
Journal:  J Phys Chem A       Date:  2015-05-18       Impact factor: 2.781

6.  A computational study of hydrogen bonds in intermolecular systems of high complexity: arachno-pentaborane(11)···Y with Y = O2 and N 2.

Authors:  Abedin Zabardasti; Hamid Goudarziafshar; Maryam Salehnassaj; Boaz G Oliveira
Journal:  J Mol Model       Date:  2014-08-15       Impact factor: 1.810

7.  MoD-QM/MM Structural Refinement Method: Characterization of Hydrogen Bonding in the Oxytricha nova G-Quadruplex.

Authors:  Junming Ho; Michael B Newcomer; Christina M Ragain; Jose A Gascon; Enrique R Batista; J Patrick Loria; Victor S Batista
Journal:  J Chem Theory Comput       Date:  2014-10-08       Impact factor: 6.006

8.  Modeling solvation effects on absorption and fluorescence spectra of indole in aqueous solution.

Authors:  Salsabil Abou-Hatab; Vincenzo Carnevale; Spiridoula Matsika
Journal:  J Chem Phys       Date:  2021-02-14       Impact factor: 3.488

9.  Exploring the Reasons for Decrease in Binding Affinity of HIV-2 Against HIV-1 Protease Complex Using Interaction Entropy Under Polarized Force Field.

Authors:  Yalong Cong; Yuchen Li; Kun Jin; Susu Zhong; John Z H Zhang; Hao Li; Lili Duan
Journal:  Front Chem       Date:  2018-08-24       Impact factor: 5.221

10.  Molecular simulation of water and hydration effects in different environments: challenges and developments for DFTB based models.

Authors:  Puja Goyal; Hu-Jun Qian; Stephan Irle; Xiya Lu; Daniel Roston; Toshifumi Mori; Marcus Elstner; Qiang Cui
Journal:  J Phys Chem B       Date:  2014-09-16       Impact factor: 2.991

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.