| Literature DB >> 23560613 |
Saidan Ding1, Bicheng Chen, Yong Zheng, Qin Lu, Leping Liu, Qǐ-Chuan Zhuge.
Abstract
BACKGROUND: The expression of μ-opioid receptor has important role in cognitive dysfunction in Schizophrenia (SZ). The results of studies about the association of polymorphisms of μ-opioid receptor gene (OPRM1) with SZ were inconsistent.Entities:
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Year: 2013 PMID: 23560613 PMCID: PMC3641981 DOI: 10.1186/1471-244X-13-107
Source DB: PubMed Journal: BMC Psychiatry ISSN: 1471-244X Impact factor: 3.630
Figure 1The human μ-opioid receptor gene (OPRM1) structure and 4 SNP variants.
PCR-RFLP conditions for OPRM1 gene polymorphisms
| rs1799971 | 5’GTCTCGGTGCTCCTGGCTACCTCGC3’(F) | A/G | 65 | BsiEI |
| | 5’TTCGGACCGCATGGGTCGGACCGGT3’(R) | | | |
| rs2075572 | 5’TAAGTTAGCTCTGGTCAAGGCTAAGAAT3’(F) | C/G | 55 | HinfI |
| | 5’ATCATCAGTCCATAGCACACGGTAA3’(R) | | | |
| rs648893 | 5’AACAGATTAGGTCATTCTCACTTTA3’(F) | C/T | 50 | Bse3DI |
| | 5’GCTTTAGCATAATAGTGCCAGTTCC3’(R) | | | |
| rs671531 | 5’ATCTGGCTAAGGCATCATTTTCACC3’(F) | A/G | 53 | SsiI |
| 5’TTTCACATCCAAGTAACTACACAGG3’(R) |
Distribution of OPRM1 genotypes and alleles between SZ cases and controls in all, female and male samples*
| | | | | | | | | | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs799971 | AA | 68 | 132 | 1.00(referent) | | 31 | 93 | 1.00(referent) | | 37 | 39 | 1.00(referent) | |
| | AG | 133 | 102 | <0.00001 | 85 | 50 | <0.00001 | 48 | 52 | 1.063(0.582-1.941) | 0.84 | ||
| | GG | 63 | 30 | <0.00001 | 30 | 11 | <0.0.00001 | 33 | 19 | 0.564(0.273-1.164) | 0.12 | ||
| | A | 269 | 366 | 1.00(referent) | | 147 | 236 | 1.00(referent) | | 122 | 130 | 1.00(referent) | |
| | G | 259 | 162 | <0.00001 | 145 | 72 | <0.00001 | 114 | 90 | 0.741(0.511-1.073) | 0.11 | ||
| | HWE(P) | 0.9 | 0.14 | | | 0.4 | 1.00 | | | 0.37 | 0.68 | | |
| rs2075572 | CC | 140 | 166 | 1.00(referent) | | 79 | 84 | 1.00(referent) | | 61 | 82 | 1.00(referent) | |
| | CG | 100 | 82 | 0.697(0.481-1.010) | 0.06 | 51 | 55 | 1.053(0.643-1.725) | 0.84 | 49 | 27 | 0 | |
| | GG | 24 | 16 | 0.594(0.301-1.171) | 0.59 | 16 | 15 | 0.951(0.437-2.071) | 0.9 | 8 | 1 | 0.02 | |
| | C | 380 | 414 | 1.00(referent) | | 209 | 223 | 1.00(referent) | | 171 | 191 | 1.00(referent) | |
| | G | 148 | 114 | 0.02 | 83 | 85 | 0.96(0.672-1.371) | 0.82 | 65 | 29 | <0.00001 | ||
| | HWE(P) | 0.32 | 0.68 | | | 0.96 | 0.91 | | | 0.56 | 0.68 | | |
| rs648893 | CC | 107 | 116 | 1.00(referent) | | 55 | 69 | 1.00(referent) | | 52 | 47 | 1.00(referent) | |
| | CT | 113 | 110 | 0.888(0.61-1.292) | 0.54 | 59 | 57 | 0.755(0.453-1.259) | 0.28 | 54 | 53 | 1.102(0.631-1.925) | 0.73 |
| | TT | 44 | 38 | 0.76(0.455-1.268) | 0.29 | 32 | 28 | 0.671(0.36-1.253) | 0.21 | 12 | 10 | 0.848(0.331-2.171) | 0.73 |
| | C | 327 | 342 | 1.00(referent) | | 169 | 195 | 1.00(referent) | | 158 | 147 | 1.00(referent) | |
| | T | 201 | 186 | 0.885(0.689-1.137) | 0.34 | 123 | 113 | 0.796(0.573-1.105) | | 78 | 73 | 1.006(0.681-1.486) | 0.98 |
| | HWE(P) | 0.13 | 0.06 | | | 0.96 | 0.84 | | | 0.38 | 0.21 | | |
| rs671531 | AA | 102 | 109 | 1.00(referent) | | 56 | 68 | 1.00(referent) | | 46 | 41 | 1.00(referent) | |
| | AG | 116 | 122 | 0.968(0.665-1.408) | 0.87 | 63 | 69 | 0.893(0.544-1.465) | 0.65 | 53 | 53 | 1.091(0.613-1.942) | 0.77 |
| | GG | 46 | 33 | 0.628(0.37-1.065) | 0.09 | 27 | 17 | 0.482(0.237-0.981) | 0.04 | 19 | 16 | 0.902(0.406-2.004) | 0.8 |
| | A | 320 | 340 | 1.00(referent) | | 175 | 205 | 1.00(referent) | | 145 | 135 | 1.00(referent) | |
| | G | 208 | 188 | 0.851(0.663-1.092) | 0.2 | 117 | 103 | 0.752(0.539-1.048) | 0.09 | 91 | 85 | 1.003(0.688-1.463) | 0.99 |
| HWE(P) | 0.2 | 0.08 | 0.95 | 1.00 | 0.67 | 1.00 |
*According to the method of multiplicity correction for SNPs in LD that was introduced by Li & Ji [54], we considered p-values < 0.01 as significant.
Comparison of the genotypic and allelic frequencies of rs1799971 and rs2075572 in different kinds of patients compared with controls by BsmI polymorphisms*
| rs799971 | All | AA | 68 | 53 | 1.00(referent) | 40 | 1.00(referent) | 34 | 1.00(referent) | 51 | 1.00(referent) | 30 | 1.00(referent) |
| | | AG | 133 | 92 | 0.888(0.568-1.387) | 78 | 0.997(0.617-1.612) | 69 | 1.038(0.627-1.718) | 101 | 1.013(0.648-1.581) | 57 | 0.971(0.572-1.65) |
| | | GG | 63 | 29 | 0.591(0.335-1.042) | 21 | 0.405(0.204-0.803) | 19 | 0.603(0.312,1.164) | 29 | 0.614(0.347-1.086) | 20 | 0.72(0.371-1.394) |
| | | A | 269 | 198 | 1.00(referent) | 158 | 1.00(referent) | 137 | 1.00(referent) | 203 | 1.00(referent) | 117 | 1.00(referent) |
| | | G | 259 | 150 | 0.787(0.599-1.033) | 120 | 0.789(0.589-1.057) | 107 | 0.811(0.598-1.101) | 159 | 0.813(0.622-1.064) | 97 | 0.861(0.626-1.184) |
| | Male | AA | 31 | 26 | 1.00(referent) | 24 | 1.00(referent) | 16 | 1.00(referent) | 21 | 1.00(referent) | 15 | 1.00(referent) |
| | | AG | 85 | 45 | 0.631(0.335-1.19) | 48 | 0.729(0.385-1.383) | 32 | 0.729(0.352-1.51) | 44 | 0.764(0.394-1.483) | 46 | 1.118(0.548-2.282) |
| | | GG | 30 | 11 | 0.437(0.184-1.039) | 10 | 0.431(0.176-1.051) | 7 | 0.452(0.163-1.254) | 11 | 0.541(0.223-1.312) | 5 | 0.344(0.111-1.066) |
| | | A | 147 | 97 | 1.00(referent) | 96 | 1.00(refrent) | 64 | 1.00(referent) | 86 | 1.00(referent) | 76 | 1.00(referent) |
| | | G | 145 | 67 | 0.7(0.476-1.031) | 68 | 0.718(0.488-1.057) | 46 | 0.729(0.468-1.135) | 66 | 0.778(0.524-1.154) | 56 | 0.747(0.494-1.131) |
| rs2075572 | All | CC | 140 | 91 | 1.00(referent) | 83 | 1.00(referent) | 68 | 1.00(referent) | 90 | 1.00(referent) | 76 | 1.00(referent) |
| | | CG | 100 | 69 | 1.062(0.708-1.591) | 49 | 0.827(0.534-1.279) | 43 | 0.885(0.559-1.402) | 78 | 1.213(0.816-1.805) | 29 | |
| | | GG | 24 | 14 | 0.897(0.441-1.825) | 7 | 0.492(0.203-1.192) | 11 | 0.944(0.437-2.038) | 13 | 0.843(0.408-1.74) | 2 | |
| | | C | 380 | 251 | 1.00(referent) | 215 | 1.00(referent) | 179 | 1.00(referent) | 258 | 1.00(referent) | 181 | 1.00(referent) |
| | | G | 148 | 97 | 0.992(0.734-1.342) | 63 | 0.752(0.536-1.056) | 65 | 0.932(0.663-1.312) | 104 | 1.035(0.769-1.392) | 33 | |
| | Female | CC | 61 | 35 | 1.00(referent) | 45 | 1.00(referent) | 31 | 1.00(referent) | 25 | 1.00(referent) | 64 | 1.00(referent) |
| | | CG | 49 | 20 | 0.711(0.366-1.384) | 27 | 0.747(0.407-1.371) | 24 | 0.854(0.45-1.621) | 27 | 1.344(0.694-2.605) | 19 | 0.37(0.196-0.698) |
| | | GG | 8 | 1 | 0.218(0.026-1.815) | 1 | 0.169(0.02-1.404) | 1 | 0.246(0.029-2.056) | 0 | - | 0 | - |
| | | C | 171 | 90 | 1.00(referent) | 117 | 1.00(referent) | 86 | 1.00(referent) | 77 | 1.00(referent) | 147 | 1.00(referent) |
| G | 65 | 22 | 0.643(0.372-1.111) | 29 | 0.652(0.397-1.072) | 26 | 0.795(0.471-1.342) | 27 | 0.922(0.547-1.557) | 19 | 0.34(0.195-0.593) | ||
*According to the method of multiplicity correction for SNPs in LD that was introduced by Li & Ji [54], we considered p-values < 0.01 as significant.
Linkage disequilibrium test between four OPRM1 gene polymorphisms
| rs1799971 | rs2075572 | 51207 | 0.02 |
| rs1799971 | rs648893 | 77832 | 0 |
| rs1799971 | rs671531 | 79945 | 0.02 |
| rs2075572 | rs648893 | 26625 | 0.18 |
| rs2075572 | rs671531 | 28738 | 0.3 |
| rs648893 | rs671531 | 2113 | 0.32 |
Figure 2Linkage disequilibrium (LD) plot of 4 OPRM1 SNPs in SZ cases and controls. There was only one LD block in OPRM1 gene. (The numbers in the squares are D’X 100. Squares are colored bright red if the D’value is high (i.e. LD is strong) and the confidence in the value of D’is high as well).
Comparison of haplotype frequencies for four OPRM1 polymorphisms between SZ cases and controls
| | | | | ||||
|---|---|---|---|---|---|---|---|
| A | C | C | A | 78.74(0.149) | 71.94(0.136) | 1.119(0.791-1.583) | 0.53 |
| A | C | C | G | 14.23(0.027) | 82.39(0.156) | 0.149(0.084-0.266) | <0.01 |
| A | C | T | A | 127.67(0.242) | 126.27(0.239) | 1.022(0.769-1.358) | 0.88 |
| A | G | C | A | 1.48(0.003) | 24.66(0.047) | - | - |
| A | G | C | G | 46.88(0.089) | 60.74(0.115) | 0.753(0.503-1126) | 0.17 |
| G | C | C | A | 22.97(0.044) | 55.75(0.106) | 0.386(0.233-0.638) | <0.01 |
| G | C | C | G | 68.80(0.130) | 17.92(0.034) | 4.317(2.526-7.377) | <0.01 |
| G | C | T | A | 67.55(0.128) | 59.73(0.113) | 1.158(0.798-1.681) | 0.44 |
| G | G | C | A | 21.59(0.041) | 1.65(0.003) | - | - |
| G | G | C | G | 72.30(0.137) | 26.95(0.051) | 2.984(1.881-4.732) | <0.01 |
| G | C | T | G | 0.04(0.000) | 0.00(0.000) | - | - |
| G | G | T | G | 5.75(0.011) | 0.00(0.000) | - | - |