Literature DB >> 23542886

Direct transfer of whole genomes from bacteria to yeast.

Bogumil J Karas1, Jelena Jablanovic, Lijie Sun, Li Ma, Gregory M Goldgof, Jason Stam, Adi Ramon, Micah J Manary, Elizabeth A Winzeler, J Craig Venter, Philip D Weyman, Daniel G Gibson, John I Glass, Clyde A Hutchison, Hamilton O Smith, Yo Suzuki.   

Abstract

Transfer of genomes into yeast facilitates genome engineering for genetically intractable organisms, but this process has been hampered by the need for cumbersome isolation of intact genomes before transfer. Here we demonstrate direct cell-to-cell transfer of bacterial genomes as large as 1.8 megabases (Mb) into yeast under conditions that promote cell fusion. Moreover, we discovered that removal of restriction endonucleases from donor bacteria resulted in the enhancement of genome transfer.

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Mesh：

Year:  2013        PMID： 23542886      PMCID： PMC4034675          DOI： 10.1038/nmeth.2433

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


  21 in total

1.  Direct isolation of human BRCA2 gene by transformation-associated recombination in yeast.

Authors:  V Larionov; N Kouprina; G Solomon; J C Barrett; M A Resnick
Journal:  Proc Natl Acad Sci U S A       Date:  1997-07-08       Impact factor: 11.205

2.  Creation of a bacterial cell controlled by a chemically synthesized genome.

Authors:  Daniel G Gibson; John I Glass; Carole Lartigue; Vladimir N Noskov; Ray-Yuan Chuang; Mikkel A Algire; Gwynedd A Benders; Michael G Montague; Li Ma; Monzia M Moodie; Chuck Merryman; Sanjay Vashee; Radha Krishnakumar; Nacyra Assad-Garcia; Cynthia Andrews-Pfannkoch; Evgeniya A Denisova; Lei Young; Zhi-Qing Qi; Thomas H Segall-Shapiro; Christopher H Calvey; Prashanth P Parmar; Clyde A Hutchison; Hamilton O Smith; J Craig Venter
Journal:  Science       Date:  2010-05-20       Impact factor: 47.728

3.  Effect of Bacillus subtilis BsuM restriction-modification on plasmid transfer by polyethylene glycol-induced protoplast fusion.

Authors:  Tomoko Maehara; Mitsuhiro Itaya; Mitsuo Ogura; Teruo Tanaka
Journal:  FEMS Microbiol Lett       Date:  2011-10-03       Impact factor: 2.742

4.  One-step assembly in yeast of 25 overlapping DNA fragments to form a complete synthetic Mycoplasma genitalium genome.

Authors:  Daniel G Gibson; Gwynedd A Benders; Kevin C Axelrod; Jayshree Zaveri; Mikkel A Algire; Monzia Moodie; Michael G Montague; J Craig Venter; Hamilton O Smith; Clyde A Hutchison
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-10       Impact factor: 11.205

5.  Cloning whole bacterial genomes in yeast.

Authors:  Gwynedd A Benders; Vladimir N Noskov; Evgeniya A Denisova; Carole Lartigue; Daniel G Gibson; Nacyra Assad-Garcia; Ray-Yuan Chuang; William Carrera; Monzia Moodie; Mikkel A Algire; Quang Phan; Nina Alperovich; Sanjay Vashee; Chuck Merryman; J Craig Venter; Hamilton O Smith; John I Glass; Clyde A Hutchison
Journal:  Nucleic Acids Res       Date:  2010-03-07       Impact factor: 16.971

6.  Tandem repeat coupled with endonuclease cleavage (TREC): a seamless modification tool for genome engineering in yeast.

Authors:  Vladimir N Noskov; Thomas H Segall-Shapiro; Ray-Yuan Chuang
Journal:  Nucleic Acids Res       Date:  2010-03-12       Impact factor: 16.971

7.  Fusion of mycoplasmas: the formation of cell hybrids.

Authors:  M Tarshis; M Salman; S Rottem
Journal:  FEMS Microbiol Lett       Date:  1991-07-15       Impact factor: 2.742

8.  Creating bacterial strains from genomes that have been cloned and engineered in yeast.

Authors:  Carole Lartigue; Sanjay Vashee; Mikkel A Algire; Ray-Yuan Chuang; Gwynedd A Benders; Li Ma; Vladimir N Noskov; Evgeniya A Denisova; Daniel G Gibson; Nacyra Assad-Garcia; Nina Alperovich; David W Thomas; Chuck Merryman; Clyde A Hutchison; Hamilton O Smith; J Craig Venter; John I Glass
Journal:  Science       Date:  2009-08-20       Impact factor: 47.728

9.  Selective isolation of genomic loci from complex genomes by transformation-associated recombination cloning in the yeast Saccharomyces cerevisiae.

Authors:  Natalay Kouprina; Vladimir Larionov
Journal:  Nat Protoc       Date:  2008       Impact factor: 13.491

10.  Knocking out multigene redundancies via cycles of sexual assortment and fluorescence selection.

Authors:  Yo Suzuki; Robert P St Onge; Ramamurthy Mani; Oliver D King; Adrian Heilbut; Vyacheslav M Labunskyy; Weidong Chen; Linda Pham; Lan V Zhang; Amy H Y Tong; Corey Nislow; Guri Giaever; Vadim N Gladyshev; Marc Vidal; Peter Schow; Joseph Lehár; Frederick P Roth
Journal:  Nat Methods       Date:  2011-01-09       Impact factor: 28.547
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  15 in total

1.  Transferring whole genomes from bacteria to yeast spheroplasts using entire bacterial cells to reduce DNA shearing.

Authors:  Bogumil J Karas; Jelena Jablanovic; Edward Irvine; Lijie Sun; Li Ma; Philip D Weyman; Daniel G Gibson; John I Glass; J Craig Venter; Clyde A Hutchison; Hamilton O Smith; Yo Suzuki
Journal:  Nat Protoc       Date:  2014-03-06       Impact factor: 13.491

2.  Programming biological operating systems: genome design, assembly and activation.

Authors:  Daniel G Gibson
Journal:  Nat Methods       Date:  2014-05       Impact factor: 28.547

Review 3.  Strategies for cloning and manipulating natural and synthetic chromosomes.

Authors:  Bogumil J Karas; Yo Suzuki; Philip D Weyman
Journal:  Chromosome Res       Date:  2015-02       Impact factor: 5.239

4.  Bacterial genome reduction using the progressive clustering of deletions via yeast sexual cycling.

Authors:  Yo Suzuki; Nacyra Assad-Garcia; Maxim Kostylev; Vladimir N Noskov; Kim S Wise; Bogumil J Karas; Jason Stam; Michael G Montague; Timothy J Hanly; Nico J Enriquez; Adi Ramon; Gregory M Goldgof; R Alexander Richter; Sanjay Vashee; Ray-Yuan Chuang; Elizabeth A Winzeler; Clyde A Hutchison; Daniel G Gibson; Hamilton O Smith; John I Glass; J Craig Venter
Journal:  Genome Res       Date:  2015-02-05       Impact factor: 9.043

5.  Impact of donor-recipient phylogenetic distance on bacterial genome transplantation.

Authors:  Fabien Labroussaa; Anne Lebaudy; Vincent Baby; Géraldine Gourgues; Dominick Matteau; Sanjay Vashee; Pascal Sirand-Pugnet; Sébastien Rodrigue; Carole Lartigue
Journal:  Nucleic Acids Res       Date:  2016-08-03       Impact factor: 16.971

6.  Optimization and Characterization of the Synthetic Secondary Chromosome synVicII in Escherichia coli.

Authors:  Sonja J Messerschmidt; Daniel Schindler; Celine M Zumkeller; Franziska S Kemter; Nadine Schallopp; Torsten Waldminghaus
Journal:  Front Bioeng Biotechnol       Date:  2016-12-23

7.  The 2013 ACR meeting: mad macs at the Marina.

Authors:  David S Pisetsky
Journal:  Arthritis Res Ther       Date:  2013       Impact factor: 5.156

8.  Assembly of eukaryotic algal chromosomes in yeast.

Authors:  Bogumil J Karas; Bhuvan Molparia; Jelena Jablanovic; Wolfgang J Hermann; Ying-Chi Lin; Christopher L Dupont; Christian Tagwerker; Isaac T Yonemoto; Vladimir N Noskov; Ray-Yuan Chuang; Andrew E Allen; John I Glass; Clyde A Hutchison; Hamilton O Smith; J Craig Venter; Philip D Weyman
Journal:  J Biol Eng       Date:  2013-12-10       Impact factor: 4.355

9.  Simultaneous non-contiguous deletions using large synthetic DNA and site-specific recombinases.

Authors:  Radha Krishnakumar; Carissa Grose; Daniel H Haft; Jayshree Zaveri; Nina Alperovich; Daniel G Gibson; Chuck Merryman; John I Glass
Journal:  Nucleic Acids Res       Date:  2014-06-09       Impact factor: 16.971

10.  Rescue of mutant fitness defects using in vitro reconstituted designer transposons in Mycoplasma mycoides.

Authors:  Bogumil J Karas; Kim S Wise; Lijie Sun; J Craig Venter; John I Glass; Clyde A Hutchison; Hamilton O Smith; Yo Suzuki
Journal:  Front Microbiol       Date:  2014-07-23       Impact factor: 5.640
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