Literature DB >> 23538861

FISH-quant: automatic counting of transcripts in 3D FISH images.

Florian Mueller, Adrien Senecal, Katjana Tantale, Hervé Marie-Nelly, Nathalie Ly, Olivier Collin, Eugenia Basyuk, Edouard Bertrand, Xavier Darzacq, Christophe Zimmer.   

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Year:  2013        PMID： 23538861     DOI： 10.1038/nmeth.2406

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  6 in total

1.  Automatic fluorescent tag detection in 3D with super-resolution: application to the analysis of chromosome movement.

Authors:  D Thomann; D R Rines; P K Sorger; G Danuser
Journal:  J Microsc       Date:  2002-10       Impact factor: 1.758

Review 2.  Validating transcripts with probes and imaging technology.

Authors:  Shalev Itzkovitz; Alexander van Oudenaarden
Journal:  Nat Methods       Date:  2011-03-30       Impact factor: 28.547

Review 3.  Central dogma at the single-molecule level in living cells.

Authors:  Gene-Wei Li; X Sunney Xie
Journal:  Nature       Date:  2011-07-20       Impact factor: 49.962

4.  Single-RNA counting reveals alternative modes of gene expression in yeast.

Authors:  Daniel Zenklusen; Daniel R Larson; Robert H Singer
Journal:  Nat Struct Mol Biol       Date:  2008-11-16       Impact factor: 15.369

5.  Imaging individual mRNA molecules using multiple singly labeled probes.

Authors:  Arjun Raj; Patrick van den Bogaard; Scott A Rifkin; Alexander van Oudenaarden; Sanjay Tyagi
Journal:  Nat Methods       Date:  2008-09-21       Impact factor: 28.547

6.  The transcriptional cycle of HIV-1 in real-time and live cells.

Authors:  Stéphanie Boireau; Paolo Maiuri; Eugenia Basyuk; Manuel de la Mata; Anna Knezevich; Bérangère Pradet-Balade; Volker Bäcker; Alberto Kornblihtt; Alessandro Marcello; Edouard Bertrand
Journal:  J Cell Biol       Date:  2007-10-22       Impact factor: 10.539
  6 in total
  145 in total

1.  Quantitative spatial analysis of transcripts in multinucleate cells using single-molecule FISH.

Authors:  ChangHwan Lee; Samantha E Roberts; Amy S Gladfelter
Journal:  Methods       Date:  2015-12-12       Impact factor: 3.608

2.  Whole-cell, multicolor superresolution imaging using volumetric multifocus microscopy.

Authors:  Bassam Hajj; Jan Wisniewski; Mohamed El Beheiry; Jiji Chen; Andrey Revyakin; Carl Wu; Maxime Dahan
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-24       Impact factor: 11.205

3.  Transition state dynamics during a stochastic fate choice.

Authors:  Vlatka Antolović; Tchern Lenn; Agnes Miermont; Jonathan R Chubb
Journal:  Development       Date:  2019-04-08       Impact factor: 6.868

Review 4.  Imaging the Life and Death of mRNAs in Single Cells.

Authors:  Jeffrey A Chao; Timothée Lionnet
Journal:  Cold Spring Harb Perspect Biol       Date:  2018-12-03       Impact factor: 10.005

5.  ELAV Proteins Bind and Stabilize C/EBP mRNA in the Induction of Long-Term Memory in Aplysia.

Authors:  Anastasios A Mirisis; Ashley M Kopec; Thomas J Carew
Journal:  J Neurosci       Date:  2020-12-09       Impact factor: 6.167

6.  Fluctuations of pol I and fibrillarin contents of the nucleoli.

Authors:  M Hornáček; L Kováčik; T Mazel; D Cmarko; E Bártová; I Raška; E Smirnov
Journal:  Nucleus       Date:  2017-06-16       Impact factor: 4.197

7.  Imaging mRNA and protein interactions within neurons.

Authors:  Carolina Eliscovich; Shailesh M Shenoy; Robert H Singer
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-21       Impact factor: 11.205

8.  Promoter-mediated diversification of transcriptional bursting dynamics following gene duplication.

Authors:  Edward Tunnacliffe; Adam M Corrigan; Jonathan R Chubb
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-30       Impact factor: 11.205

9.  Rapid and multi-cycle smFISH enabled by microfluidic ion concentration polarization for in-situ profiling of tissue-specific gene expression in whole C. elegans.

Authors:  Gongchen Sun; Jason Wan; Hang Lu
Journal:  Biomicrofluidics       Date:  2019-11-01       Impact factor: 2.800

10.  Fold-Change Detection of NF-κB at Target Genes with Different Transcript Outputs.

Authors:  Victor C Wong; Shibin Mathew; Ramesh Ramji; Suzanne Gaudet; Kathryn Miller-Jensen
Journal:  Biophys J       Date:  2019-01-12       Impact factor: 4.033
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