Literature DB >> 21776076

Central dogma at the single-molecule level in living cells.

Gene-Wei Li1, X Sunney Xie.   

Abstract

Gene expression originates from individual DNA molecules within living cells. Like many single-molecule processes, gene expression and regulation are stochastic, that is, sporadic in time. This leads to heterogeneity in the messenger-RNA and protein copy numbers in a population of cells with identical genomes. With advanced single-cell fluorescence microscopy, it is now possible to quantify transcriptomes and proteomes with single-molecule sensitivity. Dynamic processes such as transcription-factor binding, transcription and translation can be monitored in real time, providing quantitative descriptions of the central dogma of molecular biology and the demonstration that a stochastic single-molecule event can determine the phenotype of a cell.

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Year:  2011        PMID: 21776076      PMCID: PMC3600414          DOI: 10.1038/nature10315

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  83 in total

1.  Regulation of noise in the expression of a single gene.

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Journal:  Nat Genet       Date:  2002-04-22       Impact factor: 38.330

2.  Bacterial persistence as a phenotypic switch.

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Journal:  Science       Date:  2004-08-12       Impact factor: 47.728

3.  Thin laser light sheet microscope for microbial oceanography.

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Journal:  Opt Express       Date:  2002-01-28       Impact factor: 3.894

4.  Protein mobility in the cytoplasm of Escherichia coli.

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Journal:  J Bacteriol       Date:  1999-01       Impact factor: 3.490

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Journal:  Science       Date:  1990-04-06       Impact factor: 47.728

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Journal:  Biophys Chem       Date:  1979-05       Impact factor: 2.352

7.  Improved patch-clamp techniques for high-resolution current recording from cells and cell-free membrane patches.

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Journal:  Pflugers Arch       Date:  1981-08       Impact factor: 3.657

8.  Diffusion-driven mechanisms of protein translocation on nucleic acids. 3. The Escherichia coli lac repressor--operator interaction: kinetic measurements and conclusions.

Authors:  R B Winter; O G Berg; P H von Hippel
Journal:  Biochemistry       Date:  1981-11-24       Impact factor: 3.162

9.  Uracil DNA glycosylase uses DNA hopping and short-range sliding to trap extrahelical uracils.

Authors:  Rishi H Porecha; James T Stivers
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-31       Impact factor: 11.205

10.  Direct cell reprogramming is a stochastic process amenable to acceleration.

Authors:  Jacob Hanna; Krishanu Saha; Bernardo Pando; Jeroen van Zon; Christopher J Lengner; Menno P Creyghton; Alexander van Oudenaarden; Rudolf Jaenisch
Journal:  Nature       Date:  2009-11-08       Impact factor: 49.962

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  146 in total

Review 1.  Photophysics of fluorescent probes for single-molecule biophysics and super-resolution imaging.

Authors:  Taekjip Ha; Philip Tinnefeld
Journal:  Annu Rev Phys Chem       Date:  2012-01-30       Impact factor: 12.703

2.  High Spatiotemporal-Resolution Magnetic Tweezers: Calibration and Applications for DNA Dynamics.

Authors:  David Dulin; Tao Ju Cui; Jelmer Cnossen; Margreet W Docter; Jan Lipfert; Nynke H Dekker
Journal:  Biophys J       Date:  2015-11-17       Impact factor: 4.033

Review 3.  Random monoallelic expression of autosomal genes: stochastic transcription and allele-level regulation.

Authors:  Björn Reinius; Rickard Sandberg
Journal:  Nat Rev Genet       Date:  2015-10-07       Impact factor: 53.242

4.  Single in the (Cell) City: a protein-folding story.

Authors:  Anne Plochowietz; Achillefs N Kapanidis
Journal:  Nat Methods       Date:  2015-08       Impact factor: 28.547

5.  Probing molecular choreography through single-molecule biochemistry.

Authors:  Antoine M van Oijen; Nicholas E Dixon
Journal:  Nat Struct Mol Biol       Date:  2015-12       Impact factor: 15.369

6.  Sampling techniques for single-cell electrophoresis.

Authors:  Christine Cecala; Jonathan V Sweedler
Journal:  Analyst       Date:  2012-01-30       Impact factor: 4.616

7.  The induced RNA-binding protein, HuR, targets 3'-UTR region of IL-6 mRNA and enhances its stabilization in periodontitis.

Authors:  K Ouhara; S Munenaga; M Kajiya; K Takeda; S Matsuda; Y Sato; Y Hamamoto; T Iwata; S Yamasaki; K Akutagawa; N Mizuno; T Fujita; E Sugiyama; H Kurihara
Journal:  Clin Exp Immunol       Date:  2018-03-08       Impact factor: 4.330

8.  Genome-wide detection of single-nucleotide and copy-number variations of a single human cell.

Authors:  Chenghang Zong; Sijia Lu; Alec R Chapman; X Sunney Xie
Journal:  Science       Date:  2012-12-21       Impact factor: 47.728

9.  Single-Cell RNA Sequencing of Ovarian Cancer: Promises and Challenges.

Authors:  Shobhana Talukdar; Zenas Chang; Boris Winterhoff; Timothy K Starr
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

10.  Polyglycerol-Dendronized Perylenediimides as Stable, Water-Soluble Fluorophores.

Authors:  Si Kyung Yang; Steven C Zimmerman
Journal:  Adv Funct Mater       Date:  2012-04-17       Impact factor: 18.808

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