| Literature DB >> 23536898 |
J Megan Steinweg1, Sindhu Jagadamma, Joshua Frerichs, Melanie A Mayes.
Abstract
Enzyme dynamics are being incorporated into soil carbon cycling models and accurate representation of enzyme kinetics is an important step in predicting belowground nutrient dynamics. A scarce number of studies have measured activation energy (Ea) in soils and fewer studies have measured Ea in arctic and tropical soils, or in subsurface soils. We determined the Ea for four typical lignocellulose degrading enzymes in the A and B horizons of seven soils covering six different soil orders. We also elucidated which soil properties predicted any measurable differences in Ea. β-glucosidase, cellobiohydrolase, phenol oxidase and peroxidase activities were measured at five temperatures, 4, 21, 30, 40, and 60°C. Ea was calculated using the Arrhenius equation. β-glucosidase and cellobiohydrolase Ea values for both A and B horizons in this study were similar to previously reported values, however we could not make a direct comparison for B horizon soils because of the lack of data. There was no consistent relationship between hydrolase enzyme Ea and the environmental variables we measured. Phenol oxidase was the only enzyme that had a consistent positive relationship between Ea and pH in both horizons. The Ea in the arctic and subarctic zones for peroxidase was lower than the hydrolases and phenol oxidase values, indicating peroxidase may be a rate limited enzyme in environments under warming conditions. By including these six soil types we have increased the number of soil oxidative enzyme Ea values reported in the literature by 50%. This study is a step towards better quantifying enzyme kinetics in different climate zones.Entities:
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Year: 2013 PMID: 23536898 PMCID: PMC3607567 DOI: 10.1371/journal.pone.0059943
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Soil characteristics and environmental variables.
| Soils | Location | Order | Sample Year | Horizon | depth (cm) | Clay (%) | pH | Total C (%) | avg T (°C) | GWC | MAT (°C) | MAP (mm) |
| Arctic 1 | Fairbanks, AK | Gelisol | Dec-10 | Active | 0–30 | 13 | 7.03 | 2.54 | −12.0 | 0.362 | −2.9 | 572 |
| Permafrost | 50–75 | 13 | 8.05 | 1.82 | 0.453 | −2.9 | 572 | |||||
| Subarctic 1 | Krýsuvík, Iceland | Andisol | July-11 | A | 0–15 | 12 | 5.84 | 8.49 | 8.6 | 0.775 | 5.0 | 1600 |
| B | 35–55 | 10 | 6.13 | 8.14 | 1.053 | 5.0 | 1600 | |||||
| Temperate 1 | Kane, IL | Mollisol | July-11 | A | 0–15 | 35 | 6.70 | 3.72 | 19.9 | 0.354 | 11.3 | 996 |
| B | 55–70 | 26 | 6.80 | 1.66 | 0.291 | 11.3 | 996 | |||||
| Temperate 2 | Gibson, TN | Alfisol | April-11 | A | 0–15 | 29 | 5.50 | 1.06 | 12.2 | 0.217 | 16.9 | 1381 |
| B | 50–75 | 32 | 5.80 | 0.52 | 0.12 | 16.9 | 1381 | |||||
| Temperate 3 | Blount, TN | Ultisol | May-11 | A | 0–10 | 25 | 6.17 | 1.97 | 16.6 | 0.239 | 14.7 | 1225 |
| B | 40–60 | 45 | 5.11 | 0.26 | 0.203 | 14.7 | 1225 | |||||
| Tropical 1 | Lavras, Brazil | Oxisol | March-11 | A | 0–12 | 67 | 4.42 | 5.85 | 24.0 | 0.299 | 19.3 | 1343.3 |
| B | 42–65 | 79 | 4.68 | 2.33 | 0.272 | 19.3 | 1343.3 | |||||
| Tropical 2 | Lavras, Brazil | Ultisol | March-11 | A | 0–10 | 45 | 5.42 | 3.17 | 24.0 | 0.24 | 19.3 | 1343.3 |
| B | 37–50 | 42 | 5.17 | 1.07 | 0.227 | 19.3 | 1343.3 |
Total C = total carbon, avg T = average air temperature (°C) for the month preceding sampling, GWC = gravimetric water content, MAT = mean annual temperature, MAP = mean annual precipitation.
Activation Energies (kJ mol−1) with standard error in parentheses (analytical replicates n = 8 for BG, CB; n = 16 for PER, POX) for extracellular enzymes. “*” indicated n = 1.
| Soil | Ea (kJ/mol) | ||||||||
| Horizon | BG | CB | PER | POX | |||||
| Arctic | A | 35.4 | (1.34) | 39.4 | (3.93) | 12.7 | (0.52) | 81.8 | (7.38) |
| P | 34.8 | (1.05) | 18.7 | (4.22) | 21.3 | (0.92) | 74.2 | (3.16) | |
| Subarctic | A | 36.5 | (0.73) | 38.6 | (0.59) | 21.2 | (2.16) | 45.7 | (5.56) |
| B | 52.2 | (2.08) | 41.5 | (0.62) | 22.4 | (2.20) | 39.4 | (10.10) | |
| Temperate 1 | A | 40.9 | (1.46) | 38.0 | (1.05) | 64.9 | (2.24) | 102.0 | (9.22) |
| B | 49.4 | (2.48) | 21.2 | (9.97) | 28.0 | (6.50) | 94.8 | (6.81) | |
| Temperate 2 | A | 31.0 | (0.69) | 43.4 | (0.81) | 25.4 | (1.80) | 49.5 | (5.88) |
| B | 40.9 | (2.48) | 39.9 | (7.48) | 19.8 | (1.82) | 47.5 | (3.75) | |
| Temperate 3 | A | 51.5 | (2.17) | 53.6 | (2.51) | 28.8 | (1.69) | 73.2 | (6.09) |
| B | 58.8 | (4.98) | 46.7 | (2.36) | 54.2 | (8.84) | 29.0 | (4.58) | |
| Tropical 1 | A | 47.8 | (0.93) | 50.5 | (7.58) | 26.5 | (4.25) | 47.7 | (10.00) |
| B | 56.6 | (2.66) | 47.0 | * | 47.1 | (4.58) | 27.1 | (11.90) | |
| Tropical 2 | A | 39.3 | (1.51) | 42.5 | (2.27) | 58.3 | (5.12) | 82.5 | (9.96) |
| B | 42.8 | (1.91) | 43.3 | (2.46) | 22.8 | (3.09) | 45.5 | (3.55) | |
Figure 1Activation energy for hydrolytic and oxidative enzymes.
Ea in (a) A horizon and (b) B horizon for β-glucosidase (BG), cellobiohydrolase (CB), peroxidase (PER) and phenol oxidase (POX). Activation energy calculated from three subsamples taken from each soil and depth combination. The number of study locations per biome were tropical n = 2; temperature n = 3; subarctic n = 1; arctic n = 1. The “*” indicates a significant effect of biome with a 0.05≤P≤0.1 and “**” indicates a significant effect of biome with a P≤0.01.
Linear and polynomial regression statistics relating Ea for four enzymes to four different environmental variables.
| A HORIZON | B HORIZON | ||||||||
| enzyme | variable | regression | r2 |
|
| regression | r2 |
|
|
| β-glucosidase | clay | y = 0.21x+31.21 | 0.28 | 3.35 | 0.13 | y = 0.25x+35.76 | 0.22 | 2.67 | 0.16 |
| pH | y = −4.87x+75.01 | 0.54 | 8.09 | 0.04 | |||||
| avg T | y = 31.8−0.04x+0.02x2 | 0.35 | 2.62 | 0.19 | y = 0.40x+40.44 | 0.54 | 8.23 | 0.04 | |
| MAT | y = 41.54+1.96x−0.09x2 | 0.56 | 4.87 | 0.08 | |||||
| cellobiohydrolase | clay | ||||||||
| pH | y = −4.95x+71.1 | 0.72 | 16.43 | 0.01 | |||||
| avg T | y = 34.74+1.03x−0.03x2 | 0.71 | 7.17 | 0.07 | |||||
| MAT | y = 0.39x+36.50 | 0.37 | 4.49 | 0.09 | y = 30.57+2.58x−0.09x2 | 0.71 | 8.30 | 0.04 | |
| peroxidase | clay | y = 1.01x+0.99 | 0.46 | 6.15 | 0.06 | y = 24.44−0.34x+0.008x2 | 0.48 | 3.82 | 0.12 |
| pH | |||||||||
| avg T | y = 0.83x+22.28 | 0.62 | 11.13 | 0.02 | |||||
| MAT | y = 1.2x+16.56 | 0.44 | 5.73 | 0.06 | |||||
| phenol oxidase | clay | y = −0.79x+79.75 | 0.31 | 3.73 | 0.11 | ||||
| pH | y = 14.71x−21.78 | 0.23 | 2.77 | 0.16 | y = 12.45x−2.41 | 0.61 | 10.40 | 0.02 | |
| avg T | |||||||||
| MAT | y = −1.37x+69.98 | 0.34 | 4.15 | 0.10 | |||||
Data are shown for A and B horizon regressions in Supplemental , avg T = average air temperature (°C) for the month preceding sampling; MAT = mean annual temperature (°C).
Figure 2Hydrolytic and oxidative enzyme activities in the A horizon.
Enzyme activities at (a) 4°C, (b) 21°C, and (c) 30°C for hydrolytic enzyme activities in order by average air temperature 30 days prior to sampling. Oxidative enzyme activity at (d) 4°C, (e) 21°C, and (f) 30°C in order by average air temperature 30 days prior to sampling.