Literature DB >> 23531763

GPU-Accelerated Forward and Back-Projections with Spatially Varying Kernels for 3D DIRECT TOF PET Reconstruction.

S Ha1, S Matej, M Ispiryan, K Mueller.   

Abstract

We describe a GPU-accelerated framework that efficiently models spatially (shift) variant system response kernels and performs forward- and back-projection operations with these kernels for the DIRECT (Direct Image Reconstruction for TOF) iterative reconstruction approach. Inherent challenges arise from the poor memory cache performance at non-axis aligned TOF directions. Focusing on the GPU memory access patterns, we utilize different kinds of GPU memory according to these patterns in order to maximize the memory cache performance. We also exploit the GPU instruction-level parallelism to efficiently hide long latencies from the memory operations. Our experiments indicate that our GPU implementation of the projection operators has slightly faster or approximately comparable time performance than FFT-based approaches using state-of-the-art FFTW routines. However, most importantly, our GPU framework can also efficiently handle any generic system response kernels, such as spatially symmetric and shift-variant as well as spatially asymmetric and shift-variant, both of which an FFT-based approach cannot cope with.

Entities:  

Keywords:  CUDA; DIRECT TOF PET Reconstruction; Forward and back-projection; GPU; Spatially varying kernels

Year:  2013        PMID: 23531763      PMCID: PMC3605883          DOI: 10.1109/tns.2012.2233754

Source DB:  PubMed          Journal:  IEEE Trans Nucl Sci        ISSN: 0018-9499            Impact factor:   1.679


  8 in total

1.  First experimental results of time-of-flight reconstruction on an LSO PET scanner.

Authors:  Maurizio Conti; Bernard Bendriem; Mike Casey; Mu Chen; Frank Kehren; Christian Michel; Vladimir Panin
Journal:  Phys Med Biol       Date:  2005-09-13       Impact factor: 3.609

2.  Investigation of time-of-flight benefit for fully 3-D PET.

Authors:  Suleman Surti; Joel S Karp; Lucretiu M Popescu; Margaret E Daube-Witherspoon; Matthew Werner
Journal:  IEEE Trans Med Imaging       Date:  2006-05       Impact factor: 10.048

3.  Real-time 3D computed tomographic reconstruction using commodity graphics hardware.

Authors:  Fang Xu; Klaus Mueller
Journal:  Phys Med Biol       Date:  2007-05-17       Impact factor: 3.609

4.  Benefit of time-of-flight in PET: experimental and clinical results.

Authors:  Joel S Karp; Suleman Surti; Margaret E Daube-Witherspoon; Gerd Muehllehner
Journal:  J Nucl Med       Date:  2008-02-20       Impact factor: 10.057

Review 5.  GPU computing in medical physics: a review.

Authors:  Guillem Pratx; Lei Xing
Journal:  Med Phys       Date:  2011-05       Impact factor: 4.071

6.  Comparison of list-mode and DIRECT approaches for time-of-flight PET reconstruction.

Authors:  Margaret E Daube-Witherspoon; Samuel Matej; Matthew E Werner; Suleman Surti; Joel S Karp
Journal:  IEEE Trans Med Imaging       Date:  2012-03-06       Impact factor: 10.048

7.  The imaging performance of a LaBr3-based PET scanner.

Authors:  M E Daube-Witherspoon; S Surti; A Perkins; C C M Kyba; R Wiener; M E Werner; R Kulp; J S Karp
Journal:  Phys Med Biol       Date:  2010-01-07       Impact factor: 3.609

8.  Efficient 3-D TOF PET reconstruction using view-grouped histo-images: DIRECT-direct image reconstruction for TOF.

Authors:  Samuel Matej; Suleman Surti; Shridhar Jayanthi; Margaret E Daube-Witherspoon; Robert M Lewitt; Joel S Karp
Journal:  IEEE Trans Med Imaging       Date:  2009-01-13       Impact factor: 10.048

  8 in total
  6 in total

1.  Image-based Modeling of PSF Deformation with Application to Limited Angle PET Data.

Authors:  Samuel Matej; Yusheng Li; Joseph Panetta; Joel S Karp; Suleman Surti
Journal:  IEEE Trans Nucl Sci       Date:  2016-09-08       Impact factor: 1.679

Review 2.  3D/4D Reconstruction and Quantitative Total Body Imaging.

Authors:  Jinyi Qi; Samuel Matej; Guobao Wang; Xuezhu Zhang
Journal:  PET Clin       Date:  2021-01

3.  Analytic TOF PET reconstruction algorithm within DIRECT data partitioning framework.

Authors:  Samuel Matej; Margaret E Daube-Witherspoon; Joel S Karp
Journal:  Phys Med Biol       Date:  2016-04-01       Impact factor: 3.609

4.  NiftyPET: a High-throughput Software Platform for High Quantitative Accuracy and Precision PET Imaging and Analysis.

Authors:  Pawel J Markiewicz; Matthias J Ehrhardt; Kjell Erlandsson; Philip J Noonan; Anna Barnes; Jonathan M Schott; David Atkinson; Simon R Arridge; Brian F Hutton; Sebastien Ourselin
Journal:  Neuroinformatics       Date:  2018-01

5.  Primal-dual approach to optical tomography with discretized path integral with efficient formulations.

Authors:  Bingzhi Yuan; Toru Tamaki; Bisser Raytchev; Kazufumi Kaneda
Journal:  J Med Imaging (Bellingham)       Date:  2017-07-19

6.  Low-dose Cone-Beam Computed Tomography Reconstruction through a fast Three-Dimensional Compressed Sensing Method Based on the Three-Dimensional Pseudo-polar Fourier Transform.

Authors:  N Teyfouri; Hossein Rabbani; I Jabbari
Journal:  J Med Signals Sens       Date:  2021-12-28
  6 in total

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