Literature DB >> 23530221

Hypoxia induces a phase transition within a kinase signaling network in cancer cells.

Wei Wei1, Qihui Shi, Francoise Remacle, Lidong Qin, David B Shackelford, Young Shik Shin, Paul S Mischel, R D Levine, James R Heath.   

Abstract

Hypoxia is a near-universal feature of cancer, promoting glycolysis, cellular proliferation, and angiogenesis. The molecular mechanisms of hypoxic signaling have been intensively studied, but the impact of changes in oxygen partial pressure (pO2) on the state of signaling networks is less clear. In a glioblastoma multiforme (GBM) cancer cell model, we examined the response of signaling networks to targeted pathway inhibition between 21% and 1% pO2. We used a microchip technology that facilitates quantification of a panel of functional proteins from statistical numbers of single cells. We find that near 1.5% pO2, the signaling network associated with mammalian target of rapamycin (mTOR) complex 1 (mTORC1)--a critical component of hypoxic signaling and a compelling cancer drug target--is deregulated in a manner such that it will be unresponsive to mTOR kinase inhibitors near 1.5% pO2, but will respond at higher or lower pO2 values. These predictions were validated through experiments on bulk GBM cell line cultures and on neurosphere cultures of a human-origin GBM xenograft tumor. We attempt to understand this behavior through the use of a quantitative version of Le Chatelier's principle, as well as through a steady-state kinetic model of protein interactions, both of which indicate that hypoxia can influence mTORC1 signaling as a switch. The Le Chatelier approach also indicates that this switch may be thought of as a type of phase transition. Our analysis indicates that certain biologically complex cell behaviors may be understood using fundamental, thermodynamics-motivated principles.

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Year:  2013        PMID: 23530221      PMCID: PMC3625329          DOI: 10.1073/pnas.1303060110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  37 in total

1.  Negative feedback control of HIF-1 through REDD1-regulated ROS suppresses tumorigenesis.

Authors:  Peter Horak; Andrew R Crawford; Douangsone D Vadysirisack; Zachary M Nash; M Phillip DeYoung; Dennis Sgroi; Leif W Ellisen
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-22       Impact factor: 11.205

Review 2.  Oxygen sensing, homeostasis, and disease.

Authors:  Gregg L Semenza
Journal:  N Engl J Med       Date:  2011-08-11       Impact factor: 91.245

3.  Protein signaling networks from single cell fluctuations and information theory profiling.

Authors:  Young Shik Shin; F Remacle; Rong Fan; Kiwook Hwang; Wei Wei; Habib Ahmad; R D Levine; James R Heath
Journal:  Biophys J       Date:  2011-05-18       Impact factor: 4.033

4.  Hypoxia increases the expression of stem-cell markers and promotes clonogenicity in glioblastoma neurospheres.

Authors:  Eli E Bar; Alex Lin; Vasiliki Mahairaki; William Matsui; Charles G Eberhart
Journal:  Am J Pathol       Date:  2010-07-29       Impact factor: 4.307

Review 5.  Normalization of the vasculature for treatment of cancer and other diseases.

Authors:  Shom Goel; Dan G Duda; Lei Xu; Lance L Munn; Yves Boucher; Dai Fukumura; Rakesh K Jain
Journal:  Physiol Rev       Date:  2011-07       Impact factor: 37.312

6.  A clinical microchip for evaluation of single immune cells reveals high functional heterogeneity in phenotypically similar T cells.

Authors:  Chao Ma; Rong Fan; Habib Ahmad; Qihui Shi; Begonya Comin-Anduix; Thinle Chodon; Richard C Koya; Chao-Chao Liu; Gabriel A Kwong; Caius G Radu; Antoni Ribas; James R Heath
Journal:  Nat Med       Date:  2011-05-22       Impact factor: 53.440

7.  Initial testing (stage 1) of the mTOR kinase inhibitor AZD8055 by the pediatric preclinical testing program.

Authors:  Peter J Houghton; Richard Gorlick; E Anders Kolb; Richard Lock; Hernan Carol; Christopher L Morton; Stephen T Keir; C Patrick Reynolds; Min H Kang; Doris Phelps; John M Maris; Catherine Billups; Malcolm A Smith
Journal:  Pediatr Blood Cancer       Date:  2011-02-18       Impact factor: 3.167

8.  mTOR activates hypoxia-inducible factor-1α and inhibits neuronal apoptosis in the developing rat brain during the early phase after hypoxia-ischemia.

Authors:  Hongju Chen; Tao Xiong; Yi Qu; Fengyan Zhao; Donna Ferriero; Dezhi Mu
Journal:  Neurosci Lett       Date:  2011-12-08       Impact factor: 3.046

9.  Chemistries for patterning robust DNA microbarcodes enable multiplex assays of cytoplasm proteins from single cancer cells.

Authors:  Young Shik Shin; Habib Ahmad; Qihui Shi; Hyungjun Kim; Tod A Pascal; Rong Fan; William A Goddard; James R Heath
Journal:  Chemphyschem       Date:  2010-10-04       Impact factor: 3.102

10.  Hypoxia regulates TSC1/2-mTOR signaling and tumor suppression through REDD1-mediated 14-3-3 shuttling.

Authors:  Maurice Phillip DeYoung; Peter Horak; Avi Sofer; Dennis Sgroi; Leif W Ellisen
Journal:  Genes Dev       Date:  2008-01-15       Impact factor: 11.361

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  30 in total

1.  Surprisal analysis characterizes the free energy time course of cancer cells undergoing epithelial-to-mesenchymal transition.

Authors:  Sohila Zadran; Rameshkumar Arumugam; Harvey Herschman; Michael E Phelps; R D Levine
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-25       Impact factor: 11.205

2.  Single-Cell, Multiplexed Protein Detection of Rare Tumor Cells Based on a Beads-on-Barcode Antibody Microarray.

Authors:  Liu Yang; Zhihua Wang; Yuliang Deng; Yan Li; Wei Wei; Qihui Shi
Journal:  Anal Chem       Date:  2016-09-28       Impact factor: 6.986

3.  Chemical methods for the simultaneous quantitation of metabolites and proteins from single cells.

Authors:  Min Xue; Wei Wei; Yapeng Su; Jungwoo Kim; Young Shik Shin; Wilson X Mai; David A Nathanson; James R Heath
Journal:  J Am Chem Soc       Date:  2015-03-19       Impact factor: 15.419

4.  Critical Points in Tumorigenesis: A Carcinogen-Initiated Phase Transition Analyzed via Single-Cell Proteomics.

Authors:  Suresh Kumar Poovathingal; Nataly Kravchenko-Balasha; Young Shik Shin; Raphael David Levine; James R Heath
Journal:  Small       Date:  2016-01-18       Impact factor: 13.281

5.  Utilizing a high-throughput microfluidic platform to study hypoxia-driven mesenchymal-mode cell migration.

Authors:  Yuanqing Zhang; Jianguo Wen; Ledu Zhou; Lidong Qin
Journal:  Integr Biol (Camb)       Date:  2015-05-12       Impact factor: 2.192

6.  Attenuated Salmonella engineered with an apoptosis-inducing factor (AIF) eukaryotic expressing system enhances its anti-tumor effect in melanoma in vitro and in vivo.

Authors:  Huan Wang; Tingtao Chen; Linxi Wan; Jiachen Lu; Hong Wei; Ke-Yu Deng; Jing Wei; Hong-Bo Xin
Journal:  Appl Microbiol Biotechnol       Date:  2020-02-24       Impact factor: 4.813

Review 7.  Exploiting receptor tyrosine kinase co-activation for cancer therapy.

Authors:  Aik-Choon Tan; Simon Vyse; Paul H Huang
Journal:  Drug Discov Today       Date:  2016-07-21       Impact factor: 7.851

Review 8.  Single-cell proteomic analysis.

Authors:  Thai Pham; Ankush Tyagi; Yu-Sheng Wang; Jia Guo
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2020-08-03

Review 9.  Microchip-based single-cell functional proteomics for biomedical applications.

Authors:  Yao Lu; Liu Yang; Wei Wei; Qihui Shi
Journal:  Lab Chip       Date:  2017-03-29       Impact factor: 6.799

Review 10.  Recent Progress of Microfluidics in Translational Applications.

Authors:  Zongbin Liu; Xin Han; Lidong Qin
Journal:  Adv Healthc Mater       Date:  2016-03-22       Impact factor: 9.933

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