Literature DB >> 32748522

Single-cell proteomic analysis.

Thai Pham1, Ankush Tyagi1, Yu-Sheng Wang1, Jia Guo1.   

Abstract

The ability to comprehensively profile proteins in every individual cell of complex biological systems is crucial to advance our understanding of normal physiology and disease pathogenesis. Conventional bulk cell experiments mask the cell heterogeneity in the population, while the single-cell imaging methods suffer from the limited multiplexing capacities. Recent advances in microchip-, mass spectrometry-, and reiterative staining-based technologies have enabled comprehensive protein profiling in single cells. These approaches will bring new insights into a variety of biological and biomedical fields, such as signaling network regulation, cell heterogeneity, tissue architecture, disease diagnosis, and treatment monitoring. In this article, we will review the recent advances in the development of single-cell proteomic technologies, describe their advantages, discuss the current limitations and challenges, and propose potential solutions. We will also highlight the wide applications of these technologies in biology and medicine. This article is categorized under: Cancer > Molecular and Cellular Physiology.
© 2020 Wiley Periodicals LLC.

Entities:  

Keywords:  imaging; mass spectrometry; microchip; systems biology

Year:  2020        PMID: 32748522      PMCID: PMC7980505          DOI: 10.1002/wsbm.1503

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev Syst Biol Med        ISSN: 1939-005X


  77 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-27       Impact factor: 11.205

2.  Analyzing proteome topology and function by automated multidimensional fluorescence microscopy.

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3.  Laser capture microdissection: molecular analysis of tissue.

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Journal:  Science       Date:  1997-11-21       Impact factor: 47.728

4.  Systems biology. Conditional density-based analysis of T cell signaling in single-cell data.

Authors:  Smita Krishnaswamy; Matthew H Spitzer; Michael Mingueneau; Sean C Bendall; Oren Litvin; Erica Stone; Dana Pe'er; Garry P Nolan
Journal:  Science       Date:  2014-10-23       Impact factor: 47.728

5.  Mapping the Fetomaternal Peripheral Immune System at Term Pregnancy.

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Journal:  J Immunol       Date:  2016-10-28       Impact factor: 5.422

Review 6.  Single-cell protein analysis.

Authors:  Meiye Wu; Anup K Singh
Journal:  Curr Opin Biotechnol       Date:  2011-12-19       Impact factor: 9.740

7.  Multiplexed in situ immunofluorescence using dynamic DNA complexes.

Authors:  Ryan M Schweller; Jan Zimak; Dzifa Y Duose; Amina A Qutub; Walter N Hittelman; Michael R Diehl
Journal:  Angew Chem Int Ed Engl       Date:  2012-08-15       Impact factor: 15.336

8.  Chemistries for patterning robust DNA microbarcodes enable multiplex assays of cytoplasm proteins from single cancer cells.

Authors:  Young Shik Shin; Habib Ahmad; Qihui Shi; Hyungjun Kim; Tod A Pascal; Rong Fan; William A Goddard; James R Heath
Journal:  Chemphyschem       Date:  2010-10-04       Impact factor: 3.102

9.  Transcriptome-wide noise controls lineage choice in mammalian progenitor cells.

Authors:  Hannah H Chang; Martin Hemberg; Mauricio Barahona; Donald E Ingber; Sui Huang
Journal:  Nature       Date:  2008-05-22       Impact factor: 49.962

10.  Highly Multiplexed Single-Cell Protein Profiling with Large-Scale Convertible DNA-Antibody Barcoded Arrays.

Authors:  Peng Zhao; Sirsendu Bhowmick; Jianchao Yu; Jun Wang
Journal:  Adv Sci (Weinh)       Date:  2018-08-02       Impact factor: 16.806

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  5 in total

1.  Ultrasensitive and Multiplexed Protein Imaging with Cleavable Fluorescent Tyramide and Antibody Stripping.

Authors:  Thai Pham; Christopher D Nazaroff; Joshua Labaer; Jia Guo
Journal:  Int J Mol Sci       Date:  2021-08-11       Impact factor: 5.923

2.  Highly Sensitive and Multiplexed Protein Imaging With Cleavable Fluorescent Tyramide Reveals Human Neuronal Heterogeneity.

Authors:  Renjie Liao; Manas Mondal; Christopher D Nazaroff; Diego Mastroeni; Paul D Coleman; Joshua Labaer; Jia Guo
Journal:  Front Cell Dev Biol       Date:  2021-01-08

Review 3.  Multiplexed Single-Cell in situ RNA Profiling.

Authors:  Yu-Sheng Wang; Jia Guo
Journal:  Front Mol Biosci       Date:  2021-11-11

Review 4.  Multiplexed Single-Cell in Situ Protein Profiling.

Authors:  Yi Chen; Jia Guo
Journal:  ACS Meas Sci Au       Date:  2022-04-26

5.  Highly Multiplexed Single-Cell In Situ RNA and DNA Analysis by Consecutive Hybridization.

Authors:  Lu Xiao; Renjie Liao; Jia Guo
Journal:  Molecules       Date:  2020-10-23       Impact factor: 4.411

  5 in total

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