Literature DB >> 23515417

Initiation of assembly of tau(273-284) and its ΔK280 mutant: an experimental and computational study.

Luca Larini1, Megan Murray Gessel, Nichole E LaPointe, Thanh D Do, Michael T Bowers, Stuart C Feinstein, Joan-Emma Shea.   

Abstract

The microtubule associated protein tau is essential for the development and maintenance of the nervous system. Tau dysfunction is associated with a class of diseases called tauopathies, in which tau is found in an aggregated form. This paper focuses on a small aggregating fragment of tau, (273)GKVQIINKKLDL(284), encompassing the (PHF6*) region that plays a central role in tau aggregation. Using a combination of simulations and experiments, we probe the self-assembly of this peptide, with an emphasis on characterizing the early steps of aggregation. Ion-mobility mass spectrometry experiments provide a size distribution of early oligomers, TEM studies provide a time course of aggregation, and enhanced sampling molecular dynamics simulations provide atomistically detailed structural information about this intrinsically disordered peptide. Our studies indicate that a point mutation, as well the addition of heparin, lead to a shift in the conformations populated by the earliest oligomers, affecting the kinetics of subsequent fibril formation as well as the morphology of the resulting aggregates. In particular, a mutant associated with a K280 deletion (a mutation that causes a heritable form of neurodegeneration/dementia in the context of full length tau) is seen to aggregate more readily than its wild-type counterpart. Simulations and experiment reveal that the ΔK280 mutant peptide adopts extended conformations to a greater extent than the wild-type peptide, facilitating aggregation through the pre-structuring of the peptide into a fibril-competent structure.

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Year:  2013        PMID: 23515417      PMCID: PMC3663921          DOI: 10.1039/c3cp00063j

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  52 in total

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Review 5.  Protein aggregation: folding aggregates, inclusion bodies and amyloid.

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Journal:  Fold Des       Date:  1998

6.  Structural studies of tau protein and Alzheimer paired helical filaments show no evidence for beta-structure.

Authors:  O Schweers; E Schönbrunn-Hanebeck; A Marx; E Mandelkow
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7.  Characterization of prefibrillar Tau oligomers in vitro and in Alzheimer disease.

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Journal:  J Biol Chem       Date:  2011-05-06       Impact factor: 5.157

8.  Amyloid-β protein oligomerization and the importance of tetramers and dodecamers in the aetiology of Alzheimer's disease.

Authors:  Summer L Bernstein; Nicholas F Dupuis; Noel D Lazo; Thomas Wyttenbach; Margaret M Condron; Gal Bitan; David B Teplow; Joan-Emma Shea; Brandon T Ruotolo; Carol V Robinson; Michael T Bowers
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9.  A soluble oligomer of tau associated with fiber formation analyzed by NMR.

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  18 in total

1.  Tau assembly: the dominant role of PHF6 (VQIVYK) in microtubule binding region repeat R3.

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Journal:  J Phys Chem B       Date:  2015-03-24       Impact factor: 2.991

2.  Self-aggregation and coaggregation of the p53 core fragment with its aggregation gatekeeper variant.

Authors:  Jiangtao Lei; Ruxi Qi; Guanghong Wei; Ruth Nussinov; Buyong Ma
Journal:  Phys Chem Chem Phys       Date:  2016-03-21       Impact factor: 3.676

Review 3.  Structural evaluations of tau protein conformation: methodologies and approaches.

Authors:  Nicole L Zabik; Matthew M Imhof; Sanela Martic-Milne
Journal:  Biochem Cell Biol       Date:  2017-03-09       Impact factor: 3.626

4.  Regulation and aggregation of intrinsically disordered peptides.

Authors:  Zachary A Levine; Luca Larini; Nichole E LaPointe; Stuart C Feinstein; Joan-Emma Shea
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-17       Impact factor: 11.205

Review 5.  Contact-Based Analysis of Aggregation of Intrinsically Disordered Proteins.

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Journal:  Methods Mol Biol       Date:  2022

6.  Three-repeat and four-repeat tau isoforms form different oligomers.

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Review 7.  Amyloid Oligomers: A Joint Experimental/Computational Perspective on Alzheimer's Disease, Parkinson's Disease, Type II Diabetes, and Amyotrophic Lateral Sclerosis.

Authors:  Phuong H Nguyen; Ayyalusamy Ramamoorthy; Bikash R Sahoo; Jie Zheng; Peter Faller; John E Straub; Laura Dominguez; Joan-Emma Shea; Nikolay V Dokholyan; Alfonso De Simone; Buyong Ma; Ruth Nussinov; Saeed Najafi; Son Tung Ngo; Antoine Loquet; Mara Chiricotto; Pritam Ganguly; James McCarty; Mai Suan Li; Carol Hall; Yiming Wang; Yifat Miller; Simone Melchionna; Birgit Habenstein; Stepan Timr; Jiaxing Chen; Brianna Hnath; Birgit Strodel; Rakez Kayed; Sylvain Lesné; Guanghong Wei; Fabio Sterpone; Andrew J Doig; Philippe Derreumaux
Journal:  Chem Rev       Date:  2021-02-05       Impact factor: 60.622

8.  The Lys 280 → Gln mutation mimicking disease-linked acetylation of Lys 280 in tau extends the structural core of fibrils and modulates their catalytic properties.

Authors:  Harish Kumar; Jayant B Udgaonkar
Journal:  Protein Sci       Date:  2021-02-09       Impact factor: 6.725

Review 9.  Frontotemporal lobar degeneration: old knowledge and new insight into the pathogenetic mechanisms of tau mutations.

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10.  Structural Insight into Tau Protein's Paradox of Intrinsically Disordered Behavior, Self-Acetylation Activity, and Aggregation.

Authors:  Yin Luo; Buyong Ma; Ruth Nussinov; Guanghong Wei
Journal:  J Phys Chem Lett       Date:  2014-08-19       Impact factor: 6.475

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