Literature DB >> 23511477

Structural basis for recognition of autophagic receptor NDP52 by the sugar receptor galectin-8.

Byeong-Won Kim1, Seung Beom Hong, Jun Hoe Kim, Do Hoon Kwon, Hyun Kyu Song.   

Abstract

Infectious bacteria are cleared from mammalian cells by host autophagy in combination with other upstream cellular components, such as the autophagic receptor NDP52 and sugar receptor galectin-8. However, the detailed molecular basis of the interaction between these two receptors remains to be elucidated. Here, we report the biochemical characterization of both NDP52 and galectin-8 as well as the crystal structure of galectin-8 complexed with an NDP52 peptide. The unexpected observation of nicotinamide adenine dinucleotide located at the carbohydrate-binding site expands our knowledge of the sugar-binding specificity of galectin-8. The NDP52-galectin-8 complex structure explains the key determinants for recognition on both receptors and defines a special orientation of N- and C-terminal carbohydrate recognition domains of galectin-8. Dimeric NDP52 forms a ternary complex with two monomeric galectin-8 molecules as well as two LC3C molecules. These results lay the groundwork for understanding how host cells target bacterial pathogens for autophagy.

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Year:  2013        PMID: 23511477     DOI: 10.1038/ncomms2606

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  43 in total

Review 1.  Ubiquitination and selective autophagy.

Authors:  S Shaid; C H Brandts; H Serve; I Dikic
Journal:  Cell Death Differ       Date:  2012-06-22       Impact factor: 15.828

Review 2.  Selective autophagy mediated by autophagic adapter proteins.

Authors:  Terje Johansen; Trond Lamark
Journal:  Autophagy       Date:  2011-03       Impact factor: 16.016

Review 3.  Glycosylation, galectins and cellular signaling.

Authors:  Cecile Boscher; James W Dennis; Ivan R Nabi
Journal:  Curr Opin Cell Biol       Date:  2011-05-26       Impact factor: 8.382

4.  Taloside inhibitors of galectin-1 and galectin-3.

Authors:  Patrick M Collins; Christopher T Oberg; Hakon Leffler; Ulf J Nilsson; Helen Blanchard
Journal:  Chem Biol Drug Des       Date:  2012-01-11       Impact factor: 2.817

Review 5.  Inhibition of galectins with small molecules.

Authors:  Christopher T Oberg; Hakon Leffler; Ulf J Nilsson
Journal:  Chimia (Aarau)       Date:  2011       Impact factor: 1.509

Review 6.  Disease-associated carbohydrate-recognising proteins and structure-based inhibitor design.

Authors:  Mark von Itzstein
Journal:  Curr Opin Struct Biol       Date:  2008-09-03       Impact factor: 6.809

7.  The adaptor protein p62/SQSTM1 targets invading bacteria to the autophagy pathway.

Authors:  Yiyu T Zheng; Shahab Shahnazari; Andreas Brech; Trond Lamark; Terje Johansen; John H Brumell
Journal:  J Immunol       Date:  2009-10-07       Impact factor: 5.422

8.  LC3C, bound selectively by a noncanonical LIR motif in NDP52, is required for antibacterial autophagy.

Authors:  Natalia von Muhlinen; Masato Akutsu; Benjamin J Ravenhill; Ágnes Foeglein; Stuart Bloor; Trevor J Rutherford; Stefan M V Freund; David Komander; Felix Randow
Journal:  Mol Cell       Date:  2012-09-27       Impact factor: 17.970

9.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  46 in total

1.  "Stuck on sugars - how carbohydrates regulate cell adhesion, recognition, and signaling".

Authors:  Richard D Cummings
Journal:  Glycoconj J       Date:  2019-07-02       Impact factor: 2.916

2.  Gal8 Visualization of Endosome Disruption Predicts Carrier-Mediated Biologic Drug Intracellular Bioavailability.

Authors:  Kameron V Kilchrist; Somtochukwu C Dimobi; Meredith A Jackson; Brian C Evans; Thomas A Werfel; Eric A Dailing; Sean K Bedingfield; Isom B Kelly; Craig L Duvall
Journal:  ACS Nano       Date:  2019-01-18       Impact factor: 15.881

3.  Insights into autophagosome maturation revealed by the structures of ATG5 with its interacting partners.

Authors:  Jun Hoe Kim; Seung Beom Hong; Jae Keun Lee; Sisu Han; Kyung-Hye Roh; Kyung-Eun Lee; Yoon Ki Kim; Eui-Ju Choi; Hyun Kyu Song
Journal:  Autophagy       Date:  2015       Impact factor: 16.016

Review 4.  Activation and targeting of ATG8 protein lipidation.

Authors:  Sascha Martens; Dorotea Fracchiolla
Journal:  Cell Discov       Date:  2020-05-05       Impact factor: 10.849

Review 5.  Molecular definitions of autophagy and related processes.

Authors:  Lorenzo Galluzzi; Eric H Baehrecke; Andrea Ballabio; Patricia Boya; José Manuel Bravo-San Pedro; Francesco Cecconi; Augustine M Choi; Charleen T Chu; Patrice Codogno; Maria Isabel Colombo; Ana Maria Cuervo; Jayanta Debnath; Vojo Deretic; Ivan Dikic; Eeva-Liisa Eskelinen; Gian Maria Fimia; Simone Fulda; David A Gewirtz; Douglas R Green; Malene Hansen; J Wade Harper; Marja Jäättelä; Terje Johansen; Gabor Juhasz; Alec C Kimmelman; Claudine Kraft; Nicholas T Ktistakis; Sharad Kumar; Beth Levine; Carlos Lopez-Otin; Frank Madeo; Sascha Martens; Jennifer Martinez; Alicia Melendez; Noboru Mizushima; Christian Münz; Leon O Murphy; Josef M Penninger; Mauro Piacentini; Fulvio Reggiori; David C Rubinsztein; Kevin M Ryan; Laura Santambrogio; Luca Scorrano; Anna Katharina Simon; Hans-Uwe Simon; Anne Simonsen; Nektarios Tavernarakis; Sharon A Tooze; Tamotsu Yoshimori; Junying Yuan; Zhenyu Yue; Qing Zhong; Guido Kroemer
Journal:  EMBO J       Date:  2017-06-08       Impact factor: 11.598

6.  The 1:2 complex between RavZ and LC3 reveals a mechanism for deconjugation of LC3 on the phagophore membrane.

Authors:  Do Hoon Kwon; Sulhee Kim; Yang Ouk Jung; Kyung-Hye Roh; Leehyeon Kim; Byeong-Won Kim; Seung Beom Hong; In Young Lee; Ju Han Song; Woo Cheol Lee; Eui-Ju Choi; Kwang Yeon Hwang; Hyun Kyu Song
Journal:  Autophagy       Date:  2016-10-28       Impact factor: 16.016

7.  Ubiquitin-coated nanodiamonds bind to autophagy receptors for entry into the selective autophagy pathway.

Authors:  Kuang-Kai Liu; Wei-Ru Qiu; Emmanuel Naveen Raj; Huei-Fang Liu; Hou-Syun Huang; Yu-Wei Lin; Chien-Jen Chang; Ting-Hua Chen; Chinpiao Chen; Huan-Cheng Chang; Jenn-Kang Hwang; Jui-I Chao
Journal:  Autophagy       Date:  2016-11-15       Impact factor: 16.016

Review 8.  Canonical and non-canonical autophagy pathways in microglia.

Authors:  Julia Jülg; Laura Strohm; Christian Behrends
Journal:  Mol Cell Biol       Date:  2020-11-02       Impact factor: 4.272

9.  Genetically Encoded Split-Luciferase Biosensors to Measure Endosome Disruption Rapidly in Live Cells.

Authors:  Kameron V Kilchrist; John William Tierney; Craig L Duvall
Journal:  ACS Sens       Date:  2020-07-13       Impact factor: 7.711

10.  Mechanistic insights into the interactions of NAP1 with the SKICH domains of NDP52 and TAX1BP1.

Authors:  Tao Fu; Jianping Liu; Yingli Wang; Xingqiao Xie; Shichen Hu; Lifeng Pan
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-20       Impact factor: 11.205

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