Literature DB >> 23509261

Rational reprogramming of fungal polyketide first-ring cyclization.

Yuquan Xu1, Tong Zhou, Zhengfu Zhou, Shiyou Su, Sue A Roberts, William R Montfort, Jia Zeng, Ming Chen, Wei Zhang, Min Lin, Jixun Zhan, István Molnár.   

Abstract

Resorcylic acid lactones and dihydroxyphenylacetic acid lactones represent important pharmacophores with heat shock response and immune system modulatory activities. The biosynthesis of these fungal polyketides involves a pair of collaborating iterative polyketide synthases (iPKSs): a highly reducing iPKS with product that is further elaborated by a nonreducing iPKS (nrPKS) to yield a 1,3-benzenediol moiety bridged by a macrolactone. Biosynthesis of unreduced polyketides requires the sequestration and programmed cyclization of highly reactive poly-β-ketoacyl intermediates to channel these uncommitted, pluripotent substrates to defined subsets of the polyketide structural space. Catalyzed by product template (PT) domains of the fungal nrPKSs and discrete aromatase/cyclase enzymes in bacteria, regiospecific first-ring aldol cyclizations result in characteristically different polyketide folding modes. However, a few fungal polyketides, including the dihydroxyphenylacetic acid lactone dehydrocurvularin, derive from a folding event that is analogous to the bacterial folding mode. The structural basis of such a drastic difference in the way a PT domain acts has not been investigated until now. We report here that the fungal vs. bacterial folding mode difference is portable on creating hybrid enzymes, and we structurally characterize the resulting unnatural products. Using structure-guided active site engineering, we unravel structural contributions to regiospecific aldol condensations and show that reshaping the cyclization chamber of a PT domain by only three selected point mutations is sufficient to reprogram the dehydrocurvularin nrPKS to produce polyketides with a fungal fold. Such rational control of first-ring cyclizations will facilitate efforts to the engineered biosynthesis of novel chemical diversity from natural unreduced polyketides.

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Year:  2013        PMID: 23509261      PMCID: PMC3619332          DOI: 10.1073/pnas.1301201110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  44 in total

1.  Pcons5: combining consensus, structural evaluation and fold recognition scores.

Authors:  Björn Wallner; Arne Elofsson
Journal:  Bioinformatics       Date:  2005-10-04       Impact factor: 6.937

Review 2.  Chemistry and biology of resorcylic acid lactones.

Authors:  Nicolas Winssinger; Sofia Barluenga
Journal:  Chem Commun (Camb)       Date:  2006-09-25       Impact factor: 6.222

Review 3.  A biosynthetic classification of fungal and streptomycete fused-ring aromatic polyketides.

Authors:  R Thomas
Journal:  Chembiochem       Date:  2001-09-03       Impact factor: 3.164

4.  Functional analysis of the polyketide synthase genes in the filamentous fungus Gibberella zeae (anamorph Fusarium graminearum).

Authors:  Iffa Gaffoor; Daren W Brown; Ron Plattner; Robert H Proctor; Weihong Qi; Frances Trail
Journal:  Eukaryot Cell       Date:  2005-11

5.  Quick and easy yeast transformation using the LiAc/SS carrier DNA/PEG method.

Authors:  R Daniel Gietz; Robert H Schiestl
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

6.  Two different polyketide synthase genes are required for synthesis of zearalenone in Gibberella zeae.

Authors:  Yong-Tae Kim; Ye-Ryun Lee; Jianming Jin; Kap-Hoon Han; Hun Kim; Jin-Cheol Kim; Theresa Lee; Sung-Hwan Yun; Yin-Won Lee
Journal:  Mol Microbiol       Date:  2005-11       Impact factor: 3.501

7.  Characterization of the biosynthetic genes for 10,11-dehydrocurvularin, a heat shock response-modulating anticancer fungal polyketide from Aspergillus terreus.

Authors:  Yuquan Xu; Patricia Espinosa-Artiles; Vivien Schubert; Ya-ming Xu; Wei Zhang; Min Lin; A A Leslie Gunatilaka; Roderich Süssmuth; István Molnár
Journal:  Appl Environ Microbiol       Date:  2013-01-18       Impact factor: 4.792

Review 8.  Polyketides, proteins and genes in fungi: programmed nano-machines begin to reveal their secrets.

Authors:  Russell J Cox
Journal:  Org Biomol Chem       Date:  2007-05-10       Impact factor: 3.876

Review 9.  Inhibitors of the HSP90 molecular chaperone: attacking the master regulator in cancer.

Authors:  Edward McDonald; Paul Workman; Keith Jones
Journal:  Curr Top Med Chem       Date:  2006       Impact factor: 3.295

10.  Characterization of two polyketide synthase genes involved in zearalenone biosynthesis in Gibberella zeae.

Authors:  Iffa Gaffoor; Frances Trail
Journal:  Appl Environ Microbiol       Date:  2006-03       Impact factor: 4.792

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  21 in total

1.  Fungal polyketide engineering comes of age.

Authors:  Vinayak Agarwal; Bradley S Moore
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-12       Impact factor: 11.205

2.  Polyketide mimetics yield structural and mechanistic insights into product template domain function in nonreducing polyketide synthases.

Authors:  Jesus F Barajas; Gaurav Shakya; Gabriel Moreno; Heriberto Rivera; David R Jackson; Caitlyn L Topper; Anna L Vagstad; James J La Clair; Craig A Townsend; Michael D Burkart; Shiou-Chuan Tsai
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-08       Impact factor: 11.205

3.  Collaborative Biosynthesis of Maleimide- and Succinimide-Containing Natural Products by Fungal Polyketide Megasynthases.

Authors:  Michio Sato; Jacob E Dander; Chizuru Sato; Yiu-Sun Hung; Shu-Shan Gao; Man-Cheng Tang; Leibniz Hang; Jaclyn M Winter; Neil K Garg; Kenji Watanabe; Yi Tang
Journal:  J Am Chem Soc       Date:  2017-04-05       Impact factor: 15.419

4.  Diversity-oriented combinatorial biosynthesis of benzenediol lactone scaffolds by subunit shuffling of fungal polyketide synthases.

Authors:  Yuquan Xu; Tong Zhou; Shuwei Zhang; Patricia Espinosa-Artiles; Luoyi Wang; Wei Zhang; Min Lin; A A Leslie Gunatilaka; Jixun Zhan; István Molnár
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-21       Impact factor: 11.205

5.  Three new resorcylic acid derivatives from Sporotrichum laxum.

Authors:  Siyuan Wang; Shuwei Zhang; Tong Zhou; Jixun Zhan
Journal:  Bioorg Med Chem Lett       Date:  2013-09-07       Impact factor: 2.823

6.  Thioesterase domains of fungal nonreducing polyketide synthases act as decision gates during combinatorial biosynthesis.

Authors:  Yuquan Xu; Tong Zhou; Shuwei Zhang; Li-Jiang Xuan; Jixun Zhan; István Molnár
Journal:  J Am Chem Soc       Date:  2013-07-12       Impact factor: 15.419

7.  Intrinsic and Extrinsic Programming of Product Chain Length and Release Mode in Fungal Collaborating Iterative Polyketide Synthases.

Authors:  Chen Wang; Xiaojing Wang; Liwen Zhang; Qun Yue; Qingpei Liu; Ya-Ming Xu; A A Leslie Gunatilaka; Xiaoyi Wei; Yuquan Xu; István Molnár
Journal:  J Am Chem Soc       Date:  2020-09-23       Impact factor: 15.419

Review 8.  Recent progress regarding the bioactivities, biosynthesis and synthesis of naturally occurring resorcinolic macrolides.

Authors:  Jing Xu; Cheng-shi Jiang; Zai-long Zhang; Wen-quan Ma; Yue-wei Guo
Journal:  Acta Pharmacol Sin       Date:  2014-01-27       Impact factor: 6.150

9.  Phenalenone Polyketide Cyclization Catalyzed by Fungal Polyketide Synthase and Flavin-Dependent Monooxygenase.

Authors:  Shu-Shan Gao; Abing Duan; Wei Xu; Peiyuan Yu; Leibniz Hang; K N Houk; Yi Tang
Journal:  J Am Chem Soc       Date:  2016-03-22       Impact factor: 15.419

10.  Methylglucosylation of aromatic amino and phenolic moieties of drug-like biosynthons by combinatorial biosynthesis.

Authors:  Linan Xie; Liwen Zhang; Chen Wang; Xiaojing Wang; Ya-Ming Xu; Hefen Yu; Ping Wu; Shenglan Li; Lida Han; A A Leslie Gunatilaka; Xiaoyi Wei; Min Lin; István Molnár; Yuquan Xu
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-14       Impact factor: 11.205

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