Literature DB >> 23495971

Super-resolution in solution X-ray scattering and its applications to structural systems biology.

Robert P Rambo1, John A Tainer.   

Abstract

Small-angle X-ray scattering (SAXS) is a robust technique for the comprehensive structural characterizations of biological macromolecular complexes in solution. Here, we present a coherent synthesis of SAXS theory and experiment with a focus on analytical tools for accurate, objective, and high-throughput investigations. Perceived SAXS limitations are considered in light of its origins, and we present current methods that extend SAXS data analysis to the super-resolution regime. In particular, we discuss hybrid structural methods, illustrating the role of SAXS in structure refinement with NMR and ensemble refinement with single-molecule FRET. High-throughput genomics and proteomics are far outpacing macromolecular structure determinations, creating information gaps between the plethora of newly identified genes, known structures, and the structure-function relationship in the underlying biological networks. SAXS can bridge these information gaps by providing a reliable, high-throughput structural characterization of macromolecular complexes under physiological conditions.

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Year:  2013        PMID: 23495971     DOI: 10.1146/annurev-biophys-083012-130301

Source DB:  PubMed          Journal:  Annu Rev Biophys        ISSN: 1936-122X            Impact factor:   12.981


  89 in total

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3.  Small angle X-ray scattering and cross-linking for data assisted protein structure prediction in CASP 12 with prospects for improved accuracy.

Authors:  Tadeusz L Ogorzalek; Greg L Hura; Adam Belsom; Kathryn H Burnett; Andriy Kryshtafovych; John A Tainer; Juri Rappsilber; Susan E Tsutakawa; Krzysztof Fidelis
Journal:  Proteins       Date:  2018-02-07

4.  Conformational Plasticity of the Immunoglobulin Fc Domain in Solution.

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5.  Accurate SAXS profile computation and its assessment by contrast variation experiments.

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Journal:  Biophys J       Date:  2013-08-20       Impact factor: 4.033

6.  Assessing the conformational changes of pb5, the receptor-binding protein of phage T5, upon binding to its Escherichia coli receptor FhuA.

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Review 7.  Structural insights into NHEJ: building up an integrated picture of the dynamic DSB repair super complex, one component and interaction at a time.

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Journal:  DNA Repair (Amst)       Date:  2014-03-20

Review 8.  The MRE11-RAD50-NBS1 Complex Conducts the Orchestration of Damage Signaling and Outcomes to Stress in DNA Replication and Repair.

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9.  Quantitative and Qualitative Assessment Methods for Biofilm Growth: A Mini-review.

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Journal:  Res Rev J Eng Technol       Date:  2017-10-24

10.  High-throughput SAXS for the characterization of biomolecules in solution: a practical approach.

Authors:  Kevin N Dyer; Michal Hammel; Robert P Rambo; Susan E Tsutakawa; Ivan Rodic; Scott Classen; John A Tainer; Greg L Hura
Journal:  Methods Mol Biol       Date:  2014
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