Literature DB >> 23479756

Why are chlorinated pollutants so difficult to degrade aerobically? Redox stress limits 1,3-dichloroprop-1-ene metabolism by Pseudomonas pavonaceae.

Pablo I Nikel1, Danilo Pérez-Pantoja, Víctor de Lorenzo.   

Abstract

Chlorinated pollutants are hardly biodegradable under oxic conditions, but they can often be metabolized by anaerobic bacteria through organohalide respiration reactions. In an attempt to identify bottlenecks limiting aerobic catabolism of 1,3-dichloroprop-1-ene (1,3-DCP; a widely used organohalide) in Pseudomonas pavonaceae, the possible physiological restrictions for this process were surveyed. Flow cytometry and a bioluminescence reporter of metabolic state revealed that cells treated with 1,3-DCP experienced an intense stress that could be traced to the endogenous production of reactive oxygen species (ROS) during the metabolism of the compound. Cells exposed to 1,3-DCP also manifested increased levels of D-glucose-6-P 1-dehydrogenase activity (G6PDH, an enzyme key to the synthesis of reduced NADPH), observed under both glycolytic and gluconeogenic growth regimes. The increase in G6PDH activity, as well as cellular hydroperoxide levels, correlated with the generation of ROS. Additionally, the high G6PDH activity was paralleled by the accumulation of D-glucose-6-P, suggesting a metabolic flux shift that favours the production of NADPH. Thus, G6PDH and its cognate substrate seem to play an important role in P. pavonaceae under redox stress caused by 1,3-DCP, probably by increasing the rate of NADPH turnover. The data suggest that oxidative stress associated with the biodegradation of 1,3-DCP reflects a significant barrier for the evolution of aerobic pathways for chlorinated compounds, thereby allowing for the emergence of anaerobic counterparts.

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Year:  2013        PMID: 23479756      PMCID: PMC3638467          DOI: 10.1098/rstb.2012.0377

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  65 in total

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Authors:  James A Imlay
Journal:  Annu Rev Microbiol       Date:  2003       Impact factor: 15.500

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Authors:  Lars M Blank; Birgitta E Ebert; Katja Buehler; Bruno Bühler
Journal:  Antioxid Redox Signal       Date:  2010-08-01       Impact factor: 8.401

5.  Metabolic response of Pseudomonas putida during redox biocatalysis in the presence of a second octanol phase.

Authors:  Lars M Blank; Georgios Ionidis; Birgitta E Ebert; Bruno Bühler; Andreas Schmid
Journal:  FEBS J       Date:  2008-09-18       Impact factor: 5.542

6.  Ex-situ bioremediation of chlorobenzenes in soil.

Authors:  Turlough F Guerin
Journal:  J Hazard Mater       Date:  2007-09-29       Impact factor: 10.588

Review 7.  Bacterial hydrolytic dehalogenases and related enzymes: occurrences, reaction mechanisms, and applications.

Authors:  Tatsuo Kurihara; Nobuyoshi Esaki
Journal:  Chem Rec       Date:  2008       Impact factor: 6.771

Review 8.  Biotransformation of halogenated compounds.

Authors:  D J Hardman
Journal:  Crit Rev Biotechnol       Date:  1991       Impact factor: 8.429

9.  Pseudomonas Genome Database: improved comparative analysis and population genomics capability for Pseudomonas genomes.

Authors:  Geoffrey L Winsor; David K W Lam; Leanne Fleming; Raymond Lo; Matthew D Whiteside; Nancy Y Yu; Robert E W Hancock; Fiona S L Brinkman
Journal:  Nucleic Acids Res       Date:  2010-10-06       Impact factor: 16.971

10.  The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes.

Authors:  Rafael Silva-Rocha; Esteban Martínez-García; Belén Calles; Max Chavarría; Alejandro Arce-Rodríguez; Aitor de Las Heras; A David Páez-Espino; Gonzalo Durante-Rodríguez; Juhyun Kim; Pablo I Nikel; Raúl Platero; Víctor de Lorenzo
Journal:  Nucleic Acids Res       Date:  2012-11-23       Impact factor: 16.971

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  16 in total

Review 1.  Biotechnological domestication of pseudomonads using synthetic biology.

Authors:  Pablo I Nikel; Esteban Martínez-García; Víctor de Lorenzo
Journal:  Nat Rev Microbiol       Date:  2014-05       Impact factor: 60.633

2.  Pseudomonas putida KT2440 Strain Metabolizes Glucose through a Cycle Formed by Enzymes of the Entner-Doudoroff, Embden-Meyerhof-Parnas, and Pentose Phosphate Pathways.

Authors:  Pablo I Nikel; Max Chavarría; Tobias Fuhrer; Uwe Sauer; Víctor de Lorenzo
Journal:  J Biol Chem       Date:  2015-09-08       Impact factor: 5.157

3.  The CreC Regulator of Escherichia coli, a New Target for Metabolic Manipulations.

Authors:  Manuel S Godoy; Pablo I Nikel; José G Cabrera Gomez; M Julia Pettinari
Journal:  Appl Environ Microbiol       Date:  2015-10-23       Impact factor: 4.792

4.  Endogenous stress caused by faulty oxidation reactions fosters evolution of 2,4-dinitrotoluene-degrading bacteria.

Authors:  Danilo Pérez-Pantoja; Pablo I Nikel; Max Chavarría; Víctor de Lorenzo
Journal:  PLoS Genet       Date:  2013-08-29       Impact factor: 5.917

5.  Pseudomonas 2.0: genetic upgrading of P. putida KT2440 as an enhanced host for heterologous gene expression.

Authors:  Esteban Martínez-García; Pablo I Nikel; Tomás Aparicio; Víctor de Lorenzo
Journal:  Microb Cell Fact       Date:  2014-11-11       Impact factor: 5.328

6.  Exacerbation of substrate toxicity by IPTG in Escherichia coli BL21(DE3) carrying a synthetic metabolic pathway.

Authors:  Pavel Dvorak; Lukas Chrast; Pablo I Nikel; Radek Fedr; Karel Soucek; Miroslava Sedlackova; Radka Chaloupkova; Víctor de Lorenzo; Zbynek Prokop; Jiri Damborsky
Journal:  Microb Cell Fact       Date:  2015-12-21       Impact factor: 5.328

7.  A Metabolic Widget Adjusts the Phosphoenolpyruvate-Dependent Fructose Influx in Pseudomonas putida.

Authors:  Max Chavarría; Ángel Goñi-Moreno; Víctor de Lorenzo; Pablo I Nikel
Journal:  mSystems       Date:  2016-12-06       Impact factor: 6.496

8.  Organohalide respiration: microbes breathing chlorinated molecules.

Authors:  David Leys; Lorenz Adrian; Hauke Smidt
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-03-11       Impact factor: 6.237

9.  Accumulation of inorganic polyphosphate enables stress endurance and catalytic vigour in Pseudomonas putida KT2440.

Authors:  Pablo I Nikel; Max Chavarría; Esteban Martínez-García; Anne C Taylor; Víctor de Lorenzo
Journal:  Microb Cell Fact       Date:  2013-05-20       Impact factor: 5.328

10.  Metabolomics reveals differences of metal toxicity in cultures of Pseudomonas pseudoalcaligenes KF707 grown on different carbon sources.

Authors:  Sean C Booth; Aalim M Weljie; Raymond J Turner
Journal:  Front Microbiol       Date:  2015-08-17       Impact factor: 5.640

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