Literature DB >> 26289954

Axons to Exons: the Molecular Diagnosis of Rare Neurological Diseases by Next-Generation Sequencing.

Jodi Warman Chardon1, Chandree Beaulieu, Taila Hartley, Kym M Boycott, David A Dyment.   

Abstract

Neurological disorders secondary to single gene mutations are an extremely heterogeneous group of diseases, individually rare, and often associated with progressive and severe disability. Given the degree of both clinical and genetic heterogeneity, next-generation sequencing (NGS) has become an important diagnostic tool. Multi-gene panel testing based on NGS is now prominently used, while whole-exome sequencing and whole-genome sequencing are emerging to facilitate the molecular diagnosis for many genetic neurological diseases. Although single-gene testing remains an important first tier test for disorders with clear phenotype-genotype correlation, NGS provides an expanding unbiased approach to identify rare mutations in genes known to be associated with genetically heterogeneous diseases, and those not initially considered by the clinician due to rarity or atypical clinical presentation. Given the decreasing costs and relatively rapid time to results, NGS-based assessment is quickly becoming a standard-of-care test for patients with genetic neurological diseases.

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Year:  2015        PMID: 26289954     DOI: 10.1007/s11910-015-0584-7

Source DB:  PubMed          Journal:  Curr Neurol Neurosci Rep        ISSN: 1528-4042            Impact factor:   5.081


  49 in total

1.  Genome sequencing identifies major causes of severe intellectual disability.

Authors:  Christian Gilissen; Jayne Y Hehir-Kwa; Djie Tjwan Thung; Maartje van de Vorst; Bregje W M van Bon; Marjolein H Willemsen; Michael Kwint; Irene M Janssen; Alexander Hoischen; Annette Schenck; Richard Leach; Robert Klein; Rick Tearle; Tan Bo; Rolph Pfundt; Helger G Yntema; Bert B A de Vries; Tjitske Kleefstra; Han G Brunner; Lisenka E L M Vissers; Joris A Veltman
Journal:  Nature       Date:  2014-06-04       Impact factor: 49.962

2.  FORGE Canada Consortium: outcomes of a 2-year national rare-disease gene-discovery project.

Authors:  Chandree L Beaulieu; Jacek Majewski; Jeremy Schwartzentruber; Mark E Samuels; Bridget A Fernandez; Francois P Bernier; Michael Brudno; Bartha Knoppers; Janet Marcadier; David Dyment; Shelin Adam; Dennis E Bulman; Steve J M Jones; Denise Avard; Minh Thu Nguyen; Francois Rousseau; Christian Marshall; Richard F Wintle; Yaoqing Shen; Stephen W Scherer; Jan M Friedman; Jacques L Michaud; Kym M Boycott
Journal:  Am J Hum Genet       Date:  2014-06-05       Impact factor: 11.025

Review 3.  Myositis or dystrophy? Traps and pitfalls.

Authors:  Olivier Benveniste; Norma B Romero
Journal:  Presse Med       Date:  2011-03-04       Impact factor: 1.228

4.  Exome sequencing in the clinical diagnosis of sporadic or familial cerebellar ataxia.

Authors:  Brent L Fogel; Hane Lee; Joshua L Deignan; Samuel P Strom; Sibel Kantarci; Xizhe Wang; Fabiola Quintero-Rivera; Eric Vilain; Wayne W Grody; Susan Perlman; Daniel H Geschwind; Stanley F Nelson
Journal:  JAMA Neurol       Date:  2014-10       Impact factor: 18.302

5.  Effectiveness of exome and genome sequencing guided by acuity of illness for diagnosis of neurodevelopmental disorders.

Authors:  Sarah E Soden; Carol J Saunders; Laurel K Willig; Emily G Farrow; Laurie D Smith; Josh E Petrikin; Jean-Baptiste LePichon; Neil A Miller; Isabelle Thiffault; Darrell L Dinwiddie; Greyson Twist; Aaron Noll; Bryce A Heese; Lee Zellmer; Andrea M Atherton; Ahmed T Abdelmoity; Nicole Safina; Sarah S Nyp; Britton Zuccarelli; Ingrid A Larson; Ann Modrcin; Suzanne Herd; Mitchell Creed; Zhaohui Ye; Xuan Yuan; Robert A Brodsky; Stephen F Kingsmore
Journal:  Sci Transl Med       Date:  2014-12-03       Impact factor: 17.956

Review 6.  Discovering genotypes underlying human phenotypes: past successes for mendelian disease, future approaches for complex disease.

Authors:  David Botstein; Neil Risch
Journal:  Nat Genet       Date:  2003-03       Impact factor: 38.330

7.  ClinGen--the Clinical Genome Resource.

Authors:  Heidi L Rehm; Jonathan S Berg; Lisa D Brooks; Carlos D Bustamante; James P Evans; Melissa J Landrum; David H Ledbetter; Donna R Maglott; Christa Lese Martin; Robert L Nussbaum; Sharon E Plon; Erin M Ramos; Stephen T Sherry; Michael S Watson
Journal:  N Engl J Med       Date:  2015-05-27       Impact factor: 91.245

8.  Rapid whole-genome sequencing for genetic disease diagnosis in neonatal intensive care units.

Authors:  Carol Jean Saunders; Neil Andrew Miller; Sarah Elizabeth Soden; Darrell Lee Dinwiddie; Aaron Noll; Noor Abu Alnadi; Nevene Andraws; Melanie LeAnn Patterson; Lisa Ann Krivohlavek; Joel Fellis; Sean Humphray; Peter Saffrey; Zoya Kingsbury; Jacqueline Claire Weir; Jason Betley; Russell James Grocock; Elliott Harrison Margulies; Emily Gwendolyn Farrow; Michael Artman; Nicole Pauline Safina; Joshua Erin Petrikin; Kevin Peter Hall; Stephen Francis Kingsmore
Journal:  Sci Transl Med       Date:  2012-10-03       Impact factor: 17.956

9.  ClinVar: public archive of relationships among sequence variation and human phenotype.

Authors:  Melissa J Landrum; Jennifer M Lee; George R Riley; Wonhee Jang; Wendy S Rubinstein; Deanna M Church; Donna R Maglott
Journal:  Nucleic Acids Res       Date:  2013-11-14       Impact factor: 16.971

10.  Exome sequencing in undiagnosed inherited and sporadic ataxias.

Authors:  Angela Pyle; Tania Smertenko; David Bargiela; Helen Griffin; Jennifer Duff; Marie Appleton; Konstantinos Douroudis; Gerald Pfeffer; Mauro Santibanez-Koref; Gail Eglon; Patrick Yu-Wai-Man; Venkateswaran Ramesh; Rita Horvath; Patrick F Chinnery
Journal:  Brain       Date:  2014-12-12       Impact factor: 13.501

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  13 in total

Review 1.  The Impact of Next-Generation Sequencing on the Diagnosis and Treatment of Epilepsy in Paediatric Patients.

Authors:  Davide Mei; Elena Parrini; Carla Marini; Renzo Guerrini
Journal:  Mol Diagn Ther       Date:  2017-08       Impact factor: 4.074

2.  Will New Genetic Techniques Like Exome Sequencing and Others Obviate the Need for Clinical Expertise? Yes.

Authors:  Vincenzo Bonifati
Journal:  Mov Disord Clin Pract       Date:  2016-10-17

3.  Loss of ACOT7 potentiates seizures and metabolic dysfunction.

Authors:  Caitlyn E Bowman; Ebru S Selen Alpergin; Jessica M Ellis; Michael J Wolfgang
Journal:  Am J Physiol Endocrinol Metab       Date:  2019-04-30       Impact factor: 4.310

4.  Investigating the Genetic Etiology of Pediatric Patients with Peripheral Hypotonia Using the Next-Generation Sequencing Method.

Authors:  Damla Eker; Hakan Gurkan; Yasemin Karal; Sinem Yalcintepe; Selma Demir; Engin Atli; Serap T Karasalihoglu
Journal:  Glob Med Genet       Date:  2022-07-15

5.  Genome-wide sequencing technologies: A primer for paediatricians.

Authors:  Robin Z Hayeems; Kym M Boycott
Journal:  Paediatr Child Health       Date:  2017-12-02       Impact factor: 2.253

Review 6.  Developing multidisciplinary clinics for neuromuscular care and research.

Authors:  Sabrina Paganoni; Katie Nicholson; Fawn Leigh; Kathryn Swoboda; David Chad; Kristin Drake; Kellen Haley; Merit Cudkowicz; James D Berry
Journal:  Muscle Nerve       Date:  2017-08-29       Impact factor: 3.217

7.  Pathogenic variants in KPTN gene identified by clinical whole-genome sequencing.

Authors:  Isabelle Thiffault; Andrea Atherton; Bryce A Heese; Ahmed T Abdelmoity; Kailash Pawar; Emily Farrow; Lee Zellmer; Neil Miller; Sarah Soden; Carol Saunders
Journal:  Cold Spring Harb Mol Case Stud       Date:  2020-06-12

8.  Development and Validation of a Genomic Knowledge Scale to Advance Informed Decision Making Research in Genomic Sequencing.

Authors:  Michelle M Langer; Myra I Roche; Noel T Brewer; Jonathan S Berg; Cynthia M Khan; Cristina Leos; Elizabeth Moore; Michelle Brown; Christine Rini
Journal:  MDM Policy Pract       Date:  2017-02-01

Review 9.  Current scenario of the genetic testing for rare neurological disorders exploiting next generation sequencing.

Authors:  Chiara Di Resta; Giovanni Battista Pipitone; Paola Carrera; Maurizio Ferrari
Journal:  Neural Regen Res       Date:  2021-03       Impact factor: 5.135

10.  Reply to: No evidence supports genetic heterogeneity of neuronal intranuclear inclusion disease.

Authors:  Zhongbo Chen; Mina Ryten; Henry Houlden
Journal:  Ann Clin Transl Neurol       Date:  2020-10-30       Impact factor: 5.430

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