Literature DB >> 23477921

Genome-wide association studies of hematologic phenotypes: a window into human hematopoiesis.

Vijay G Sankaran1, Stuart H Orkin.   

Abstract

The study of human hematopoiesis is often limited by the inability to manipulate this process in vivo and differences that exist between humans and commonly employed model organisms. However, human genetics provides a way to gain insight into natural variation in a variety of hematologic phenotypes and creates an opportunity to better understand hematopoiesis. In this review, we discuss how genome-wide association studies are revealing common genetic variation that is associated with hematologic traits and diseases. We discuss how the resulting insight from these studies promises to increase our understanding of human hematopoiesis and outline the challenges that lay ahead in this field.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 23477921      PMCID: PMC4711360          DOI: 10.1016/j.gde.2013.02.006

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  61 in total

1.  Mapping rare and common causal alleles for complex human diseases.

Authors:  Soumya Raychaudhuri
Journal:  Cell       Date:  2011-09-30       Impact factor: 41.582

2.  Reversing the hemoglobin switch.

Authors:  Vijay G Sankaran; David G Nathan
Journal:  N Engl J Med       Date:  2010-12-02       Impact factor: 91.245

3.  Human fetal hemoglobin expression is regulated by the developmental stage-specific repressor BCL11A.

Authors:  Vijay G Sankaran; Tobias F Menne; Jian Xu; Thomas E Akie; Guillaume Lettre; Ben Van Handel; Hanna K A Mikkola; Joel N Hirschhorn; Alan B Cantor; Stuart H Orkin
Journal:  Science       Date:  2008-12-04       Impact factor: 47.728

4.  Sequence variants affecting eosinophil numbers associate with asthma and myocardial infarction.

Authors:  Daniel F Gudbjartsson; Unnur S Bjornsdottir; Eva Halapi; Anna Helgadottir; Patrick Sulem; Gudrun M Jonsdottir; Gudmar Thorleifsson; Hafdis Helgadottir; Valgerdur Steinthorsdottir; Hreinn Stefansson; Carolyn Williams; Jennie Hui; John Beilby; Nicole M Warrington; Alan James; Lyle J Palmer; Gerard H Koppelman; Andrea Heinzmann; Marcus Krueger; H Marike Boezen; Amanda Wheatley; Janine Altmuller; Hyoung Doo Shin; Soo-Taek Uh; Hyun Sub Cheong; Brynja Jonsdottir; David Gislason; Choon-Sik Park; Linda M Rasmussen; Celeste Porsbjerg; Jakob W Hansen; Vibeke Backer; Thomas Werge; Christer Janson; Ulla-Britt Jönsson; Maggie C Y Ng; Juliana Chan; Wing Yee So; Ronald Ma; Svati H Shah; Christopher B Granger; Arshed A Quyyumi; Allan I Levey; Viola Vaccarino; Muredach P Reilly; Daniel J Rader; Michael J A Williams; Andre M van Rij; Gregory T Jones; Elisabetta Trabetti; Giovanni Malerba; Pier Franco Pignatti; Attilio Boner; Lydia Pescollderungg; Domenico Girelli; Oliviero Olivieri; Nicola Martinelli; Bjorn R Ludviksson; Dora Ludviksdottir; Gudmundur I Eyjolfsson; David Arnar; Gudmundur Thorgeirsson; Klaus Deichmann; Philip J Thompson; Matthias Wjst; Ian P Hall; Dirkje S Postma; Thorarinn Gislason; Jeffrey Gulcher; Augustine Kong; Ingileif Jonsdottir; Unnur Thorsteinsdottir; Kari Stefansson
Journal:  Nat Genet       Date:  2009-02-08       Impact factor: 38.330

5.  A genome-wide association study identifies three loci associated with mean platelet volume.

Authors:  Christa Meisinger; Holger Prokisch; Christian Gieger; Nicole Soranzo; Divya Mehta; Dieter Rosskopf; Peter Lichtner; Norman Klopp; Jonathan Stephens; Nicholas A Watkins; Panos Deloukas; Andreas Greinacher; Wolfgang Koenig; Matthias Nauck; Christian Rimmbach; Henry Völzke; Annette Peters; Thomas Illig; Willem H Ouwehand; Thomas Meitinger; H-Erich Wichmann; Angela Döring
Journal:  Am J Hum Genet       Date:  2008-12-24       Impact factor: 11.025

6.  A genome-wide association study identifies six susceptibility loci for chronic lymphocytic leukemia.

Authors:  Maria Chiara Di Bernardo; Dalemari Crowther-Swanepoel; Peter Broderick; Emily Webb; Gabrielle Sellick; Ruth Wild; Kate Sullivan; Jayaram Vijayakrishnan; Yufei Wang; Alan M Pittman; Nicola J Sunter; Andrew G Hall; Martin J S Dyer; Estella Matutes; Claire Dearden; Tryfonia Mainou-Fowler; Graham H Jackson; Geoffrey Summerfield; Robert J Harris; Andrew R Pettitt; Peter Hillmen; David J Allsup; James R Bailey; Guy Pratt; Chris Pepper; Chris Fegan; James M Allan; Daniel Catovsky; Richard S Houlston
Journal:  Nat Genet       Date:  2008-08-31       Impact factor: 38.330

7.  Exome sequencing identifies GATA1 mutations resulting in Diamond-Blackfan anemia.

Authors:  Vijay G Sankaran; Roxanne Ghazvinian; Ron Do; Prathapan Thiru; Jo-Anne Vergilio; Alan H Beggs; Colin A Sieff; Stuart H Orkin; David G Nathan; Eric S Lander; Hanna T Gazda
Journal:  J Clin Invest       Date:  2012-06-18       Impact factor: 14.808

8.  A transient definitive erythroid lineage with unique regulation of the β-globin locus in the mammalian embryo.

Authors:  Kathleen E McGrath; Jenna M Frame; George J Fromm; Anne D Koniski; Paul D Kingsley; Jane Little; Michael Bulger; James Palis
Journal:  Blood       Date:  2011-03-04       Impact factor: 22.113

9.  Cell-specific protein phenotypes for the autoimmune locus IL2RA using a genotype-selectable human bioresource.

Authors:  Calliope A Dendrou; Vincent Plagnol; Erik Fung; Jennie H M Yang; Kate Downes; Jason D Cooper; Sarah Nutland; Gillian Coleman; Matthew Himsworth; Matthew Hardy; Oliver Burren; Barry Healy; Neil M Walker; Kerstin Koch; Willem H Ouwehand; John R Bradley; Nicholas J Wareham; John A Todd; Linda S Wicker
Journal:  Nat Genet       Date:  2009-08-23       Impact factor: 38.330

10.  Multiple loci are associated with white blood cell phenotypes.

Authors:  Michael A Nalls; David J Couper; Toshiko Tanaka; Frank J A van Rooij; Ming-Huei Chen; Albert V Smith; Daniela Toniolo; Neil A Zakai; Qiong Yang; Andreas Greinacher; Andrew R Wood; Melissa Garcia; Paolo Gasparini; Yongmei Liu; Thomas Lumley; Aaron R Folsom; Alex P Reiner; Christian Gieger; Vasiliki Lagou; Janine F Felix; Henry Völzke; Natalia A Gouskova; Alessandro Biffi; Angela Döring; Uwe Völker; Sean Chong; Kerri L Wiggins; Augusto Rendon; Abbas Dehghan; Matt Moore; Kent Taylor; James G Wilson; Guillaume Lettre; Albert Hofman; Joshua C Bis; Nicola Pirastu; Caroline S Fox; Christa Meisinger; Jennifer Sambrook; Sampath Arepalli; Matthias Nauck; Holger Prokisch; Jonathan Stephens; Nicole L Glazer; L Adrienne Cupples; Yukinori Okada; Atsushi Takahashi; Yoichiro Kamatani; Koichi Matsuda; Tatsuhiko Tsunoda; Toshihiro Tanaka; Michiaki Kubo; Yusuke Nakamura; Kazuhiko Yamamoto; Naoyuki Kamatani; Michael Stumvoll; Anke Tönjes; Inga Prokopenko; Thomas Illig; Kushang V Patel; Stephen F Garner; Brigitte Kuhnel; Massimo Mangino; Ben A Oostra; Swee Lay Thein; Josef Coresh; H-Erich Wichmann; Stephan Menzel; JingPing Lin; Giorgio Pistis; André G Uitterlinden; Tim D Spector; Alexander Teumer; Gudny Eiriksdottir; Vilmundur Gudnason; Stefania Bandinelli; Timothy M Frayling; Aravinda Chakravarti; Cornelia M van Duijn; David Melzer; Willem H Ouwehand; Daniel Levy; Eric Boerwinkle; Andrew B Singleton; Dena G Hernandez; Dan L Longo; Nicole Soranzo; Jacqueline C M Witteman; Bruce M Psaty; Luigi Ferrucci; Tamara B Harris; Christopher J O'Donnell; Santhi K Ganesh
Journal:  PLoS Genet       Date:  2011-06-30       Impact factor: 5.917

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  21 in total

1.  Dissection of the Major Hematopoietic Quantitative Trait Locus in Chromosome 6q23.3 Identifies miR-3662 as a Player in Hematopoiesis and Acute Myeloid Leukemia.

Authors:  Sophia E Maharry; Christopher J Walker; Sandya Liyanarachchi; Sujay Mehta; Mitra Patel; Maryam A Bainazar; Xiaomeng Huang; Malori A Lankenau; Kevin W Hoag; Parvathi Ranganathan; Ramiro Garzon; James S Blachly; Denis C Guttridge; Clara D Bloomfield; Albert de la Chapelle; Ann-Kathrin Eisfeld
Journal:  Cancer Discov       Date:  2016-06-27       Impact factor: 39.397

2.  Comprehensive population-based genome sequencing provides insight into hematopoietic regulatory mechanisms.

Authors:  Michael H Guo; Satish K Nandakumar; Jacob C Ulirsch; Seyedeh M Zekavat; Jason D Buenrostro; Pradeep Natarajan; Rany M Salem; Roberto Chiarle; Mario Mitt; Mart Kals; Kalle Pärn; Krista Fischer; Lili Milani; Reedik Mägi; Priit Palta; Stacey B Gabriel; Andres Metspalu; Eric S Lander; Sekar Kathiresan; Joel N Hirschhorn; Tõnu Esko; Vijay G Sankaran
Journal:  Proc Natl Acad Sci U S A       Date:  2016-12-28       Impact factor: 11.205

Review 3.  Anemia: progress in molecular mechanisms and therapies.

Authors:  Vijay G Sankaran; Mitchell J Weiss
Journal:  Nat Med       Date:  2015-03       Impact factor: 53.440

4.  X-linked macrocytic dyserythropoietic anemia in females with an ALAS2 mutation.

Authors:  Vijay G Sankaran; Jacob C Ulirsch; Vassili Tchaikovskii; Leif S Ludwig; Aoi Wakabayashi; Senkottuvelan Kadirvel; R Coleman Lindsley; Rafael Bejar; Jiahai Shi; Scott B Lovitch; David F Bishop; David P Steensma
Journal:  J Clin Invest       Date:  2015-02-23       Impact factor: 14.808

5.  Development and evaluation of a transfusion medicine genome wide genotyping array.

Authors:  Yuelong Guo; Michael P Busch; Mark Seielstad; Stacy Endres-Dighe; Connie M Westhoff; Brendan Keating; Carolyn Hoppe; Aarash Bordbar; Brian Custer; Adam S Butterworth; Tamir Kanias; Alan E Mast; Steve Kleinman; Yontao Lu; Grier P Page
Journal:  Transfusion       Date:  2018-11-20       Impact factor: 3.157

Review 6.  Society for Pediatric Research 2015 Young Investigator Award: genetics of human hematopoiesis-what patients can teach us about blood cell production.

Authors:  Aoi Wakabayashi; Vijay G Sankaran
Journal:  Pediatr Res       Date:  2015-11-17       Impact factor: 3.756

7.  Exploiting Gene-Expression Deconvolution to Probe the Genetics of the Immune System.

Authors:  Yael Steuerman; Irit Gat-Viks
Journal:  PLoS Comput Biol       Date:  2016-04-01       Impact factor: 4.475

8.  Transcriptional divergence and conservation of human and mouse erythropoiesis.

Authors:  Novalia Pishesha; Prathapan Thiru; Jiahai Shi; Jennifer C Eng; Vijay G Sankaran; Harvey F Lodish
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-03       Impact factor: 11.205

9.  Trim58 degrades Dynein and regulates terminal erythropoiesis.

Authors:  Christopher S Thom; Elizabeth A Traxler; Eugene Khandros; Jenna M Nickas; Olivia Y Zhou; Jacob E Lazarus; Ana P G Silva; Dolly Prabhu; Yu Yao; Chiaka Aribeana; Serge Y Fuchs; Joel P Mackay; Erika L F Holzbaur; Mitchell J Weiss
Journal:  Dev Cell       Date:  2014-09-18       Impact factor: 12.270

10.  Systematic Functional Dissection of Common Genetic Variation Affecting Red Blood Cell Traits.

Authors:  Jacob C Ulirsch; Satish K Nandakumar; Li Wang; Felix C Giani; Xiaolan Zhang; Peter Rogov; Alexandre Melnikov; Patrick McDonel; Ron Do; Tarjei S Mikkelsen; Vijay G Sankaran
Journal:  Cell       Date:  2016-06-02       Impact factor: 41.582

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