Literature DB >> 23476594

(S)-N-[(4-{(S)-1-[2-(4-Meth-oxy-benz-amido)-2-methyl-propano-yl]pyrrolidine-2-carboxamido}-3,4,5,6-tetra-hydro-2H-pyran-4-yl)carbon-yl]proline dimethyl sulfoxide monosolvate (4-MeBz-Aib-Pro-Thp-Pro-OH).

Svetlana A Stoykova1, Anthony Linden, Heinz Heimgartner.   

Abstract

The asymmetric unit of the title compound, C28H38N4O8·C2H6OS, contains one tetra-peptide and one disordered dimethyl sulfoxide (DMSO) mol-ecule. The central five-membered ring (Pro(2)) of the peptide mol-ecule has a disordered envelope conformation [occupancy ratio 0.879 (2):0.121 (2)] with the envelope flap atom, the central C atom of the three ring methylene groups, lying on alternate sides of the mean ring plane. The terminal five-membered ring (Pro(4)) also adopts an envelope conformation with the C atom of the methylene group closest to the carboxylic acid function as the envelope flap, and the six-membered tetra-hydro-pyrane ring shows a chair conformation. The tetra-peptide exists in a helical conformation, stabilized by an intra-molecular hydrogen bond between the amide N-H group of the heterocyclic α-amino acid Thp and the amide O atom of the 4-meth-oxy-benzoyl group. This inter-action has a graph set motif of S(10) and serves to maintain a fairly rigid β-turn structure. In the crystal, the terminal hy-droxy group forms a hydrogen bond with the amide O atom of Thp of a neighbouring mol-ecule, and the amide N-H group at the opposite end of the mol-ecule forms a hydrogen bond with the amide O atom of Thp of another neighbouring mol-ecule. The combination of both inter-molecular inter-actions links the mol-ecules into an extended three-dimensional framework.

Entities:  

Year:  2013        PMID: 23476594      PMCID: PMC3588532          DOI: 10.1107/S1600536813004546

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the azirine/oxazolone method, see: Heimgartner (1991 ▶); Altherr et al. (2007 ▶); Stamm & Heimgartner (2004 ▶). For the synthesis of Thp-containing peptides via the azirine/oxazolone method and their crystal structures, see: Suter et al. (2000 ▶). For the synthesis of Aib-Pro containing peptides via azirine coupling, see: Luykx et al. (2003 ▶); Stamm & Heimgartner (2006 ▶); Pradeille et al. (2012 ▶); Stoykova et al. (2012 ▶). For the insertion of Xaa-Pro units (Xaa = heterocyclic α-amino carb­oxy­lic acid) into peptides, see: Suter et al. (2000 ▶); Stamm et al. (2003 ▶). For the conformation of peptides containing α,α-disubstituted α-amino acids, see: Prasad & Balaram (1984 ▶); Toniolo & Benedetti (1991 ▶); Schweitzer-Stenner et al. (2007 ▶); Aravinda et al. (2008 ▶); Demizu et al. (2012 ▶). For crystal structures of peptaibols, see: Whitmore & Wallace (2004 ▶), authors of The Peptaibol Database http://www.cryst.bbk.ac.uk/peptaibol. For graph-set theory, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C28H38N4O8·C2H6OS M = 636.76 Orthorhombic, a = 10.8594 (1) Å b = 13.7414 (2) Å c = 21.1929 (3) Å V = 3162.48 (7) Å3 Z = 4 Mo Kα radiation μ = 0.16 mm−1 T = 160 K 0.28 × 0.20 × 0.18 mm

Data collection

Nonius KappaCCD area-detector diffractometer 53400 measured reflections 9238 independent reflections 7711 reflections with I > 2σ(I) R int = 0.044

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.103 S = 1.02 9231 reflections 433 parameters 21 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.33 e Å−3 Absolute structure: Flack & Bernardinelli (1999 ▶, 2000 ▶), 4115 Friedel pairs Flack parameter: −0.02 (8) Data collection: COLLECT (Nonius, 2000 ▶); cell refinement: DENZO-SMN (Otwinowski & Minor, 1997 ▶); data reduction: DENZO-SMN and SCALEPACK (Otwinowski & Minor, 1997 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPII (Johnson, 1976 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813004546/nc2305sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813004546/nc2305Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813004546/nc2305Isup3.cdx Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813004546/nc2305Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C28H38N4O8·C2H6OSF(000) = 1360
Mr = 636.76Dx = 1.337 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 5144 reflections
a = 10.8594 (1) Åθ = 1.0–30.0°
b = 13.7414 (2) ŵ = 0.16 mm1
c = 21.1929 (3) ÅT = 160 K
V = 3162.48 (7) Å3Prism, colourless
Z = 40.28 × 0.20 × 0.18 mm
Nonius KappaCCD area-detector diffractometer7711 reflections with I > 2σ(I)
Radiation source: Nonius FR590 sealed tube generatorRint = 0.044
Horizontally mounted graphite crystal monochromatorθmax = 30.0°, θmin = 2.1°
Detector resolution: 9 pixels mm-1h = −15→15
φ and ω scans with κ offsetsk = −19→19
53400 measured reflectionsl = −29→29
9238 independent reflections
Refinement on F2Hydrogen site location: difference Fourier map
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.042w = 1/[σ2(Fo2) + (0.0482P)2 + 0.4741P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.103(Δ/σ)max = 0.003
S = 1.02Δρmax = 0.28 e Å3
9231 reflectionsΔρmin = −0.33 e Å3
433 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
21 restraintsExtinction coefficient: 0.0096 (11)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack & Bernardinelli (1999, 2000), 4115 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: −0.02 (8)
Experimental. Solvent used: DMSO Cooling Device: Oxford Cryosystems Cryostream 700 Crystal mount: glued on a glass fibre Mosaicity (°.): 0.519 (1) Frames collected: 329 Seconds exposure per frame: 42 Degrees rotation per frame: 1.4 Crystal-Detector distance (mm): 30.0
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. The structure contains one molecule of DMSO per peptide molecule. The S atom of the DMSO molecule is disordered over two sites with the major orientation having a site occupation factor of 0.879 (2). One C atom of the central five-membered ring of the peptide molecule is also disordered over two sites with the major conformation having a site occupation factor of 0.720 (10). Similarity restraints with a tolerance of 0.01 Å were applied to the chemically equivalent bond lengths involving all disordered atoms, while neighbouring disordered atoms were restrained to have similar atomic displacement parameters. Seven low angle reflections were omitted on account of obscuration by the beam stop.
xyzUiso*/UeqOcc. (<1)
O10.49592 (11)0.79228 (10)0.02238 (7)0.0429 (3)
O20.38389 (11)0.88646 (9)−0.04216 (5)0.0320 (3)
H20.456 (2)0.9100 (18)−0.0512 (11)0.050 (6)*
O40.30778 (11)0.60218 (9)−0.01081 (5)0.0320 (3)
O70.08885 (11)0.52449 (9)0.08052 (5)0.0329 (3)
O100.17612 (11)0.31930 (8)0.20810 (5)0.0316 (3)
O130.39163 (11)0.45955 (9)0.26319 (5)0.0324 (3)
O190.57060 (13)0.44020 (11)0.04583 (8)0.0516 (4)
O300.71136 (12)0.69569 (9)0.46113 (5)0.0366 (3)
N30.28614 (13)0.70479 (10)0.07067 (6)0.0276 (3)
N60.25499 (12)0.52124 (9)0.14416 (6)0.0249 (3)
H60.2849 (19)0.5049 (15)0.1807 (10)0.039 (5)*
N90.11523 (12)0.46304 (9)0.24731 (6)0.0258 (3)
N120.28842 (13)0.41680 (10)0.35078 (7)0.0293 (3)
H120.286 (2)0.4175 (16)0.3887 (11)0.043 (6)*
C10.39833 (15)0.81984 (11)0.00303 (7)0.0276 (3)
C20.27251 (15)0.78716 (11)0.02743 (7)0.0275 (3)
H10.21650.7701−0.00840.033*
C40.30659 (14)0.61553 (11)0.04668 (7)0.0260 (3)
C50.34313 (14)0.53169 (12)0.09183 (7)0.0260 (3)
C70.13440 (14)0.51093 (11)0.13341 (7)0.0246 (3)
C80.05129 (14)0.48351 (13)0.18813 (7)0.0289 (3)
H80.00170.42510.17600.035*
C100.17081 (14)0.37502 (11)0.25323 (7)0.0254 (3)
C110.21698 (15)0.34116 (11)0.31820 (7)0.0277 (3)
C130.37882 (14)0.46585 (12)0.32135 (7)0.0271 (3)
C140.21553 (17)0.86652 (13)0.06872 (8)0.0364 (4)
H1410.23900.93220.05370.044*
H1420.12460.86130.06950.044*
C150.2703 (2)0.84566 (13)0.13333 (9)0.0399 (4)
H1510.22000.87520.16730.048*
H1520.35570.87040.13640.048*
C160.26708 (18)0.73510 (12)0.13691 (7)0.0339 (4)
H1610.33350.71010.16450.041*
H1620.18680.71180.15300.041*
C170.47177 (16)0.55084 (14)0.11973 (8)0.0335 (4)
H1710.47540.61820.13620.040*
H1720.48630.50580.15540.040*
C180.57147 (17)0.53701 (16)0.07076 (10)0.0443 (5)
H1810.55900.58410.03600.053*
H1820.65270.55040.09010.053*
C200.45803 (19)0.42227 (16)0.01315 (10)0.0456 (5)
H2010.45920.3554−0.00420.055*
H2020.45070.4682−0.02260.055*
C210.34751 (16)0.43379 (12)0.05612 (8)0.0329 (4)
H2110.34790.38020.08730.039*
H2120.27170.42730.03050.039*
C22−0.0366 (2)0.56707 (17)0.20421 (10)0.0494 (5)
H221−0.00740.62870.18510.059*0.720 (10)
H222−0.12040.55310.18820.059*0.720 (10)
H223−0.03840.61570.16980.059*0.280 (10)
H224−0.12120.54240.21110.059*0.280 (10)
C23−0.0374 (3)0.5746 (3)0.27560 (17)0.0433 (9)0.720 (10)
H231−0.05000.64280.28930.052*0.720 (10)
H232−0.10310.53350.29400.052*0.720 (10)
C23A0.0100 (10)0.6075 (6)0.2588 (4)0.040 (2)0.280 (10)
H233−0.05920.62880.28600.048*0.280 (10)
H2340.05910.66580.24790.048*0.280 (10)
C240.08878 (18)0.53834 (13)0.29483 (9)0.0380 (4)
H2410.15050.59130.29320.046*0.720 (10)
H2420.08730.51040.33790.046*0.720 (10)
H2430.16530.57010.30970.046*0.280 (10)
H2440.04410.51090.33150.046*0.280 (10)
C250.29830 (18)0.25073 (13)0.31024 (9)0.0385 (4)
H2510.36990.26710.28420.058*
H2520.25080.19900.28970.058*
H2530.32610.22830.35180.058*
C260.10223 (17)0.31609 (13)0.35741 (8)0.0345 (4)
H2610.12700.28010.39530.052*
H2620.04630.27590.33220.052*
H2630.06020.37620.36980.052*
C270.46259 (14)0.52808 (12)0.35961 (7)0.0264 (3)
C280.45392 (15)0.53814 (13)0.42525 (8)0.0298 (3)
H280.39000.50610.44770.036*
C290.53853 (16)0.59476 (13)0.45724 (8)0.0321 (4)
H290.53240.60140.50170.039*
C300.63240 (15)0.64214 (12)0.42502 (8)0.0294 (3)
C310.64158 (15)0.63358 (13)0.35972 (8)0.0315 (4)
H310.70490.66640.33730.038*
C320.55693 (15)0.57640 (13)0.32804 (8)0.0305 (3)
H320.56330.56990.28350.037*
C330.82609 (16)0.72279 (15)0.43330 (9)0.0380 (4)
H3310.86780.66460.41730.057*
H3320.87800.75440.46510.057*
H3330.81120.76810.39840.057*
S1A0.73887 (6)0.66072 (5)0.67871 (3)0.0570 (2)0.879 (2)
S1B0.7574 (3)0.7383 (4)0.69153 (18)0.0500 (16)0.121 (2)
O30.66114 (17)0.7045 (2)0.72672 (8)0.0883 (7)
C340.7137 (4)0.7294 (3)0.60964 (12)0.1115 (14)
H3410.62890.71970.59510.167*0.879 (2)
H3420.77110.70820.57670.167*0.879 (2)
H3430.72710.79850.61870.167*0.879 (2)
H3440.62990.75460.60420.167*0.121 (2)
H3450.71660.66120.59630.167*0.121 (2)
H3460.77090.76770.58390.167*0.121 (2)
C350.8931 (2)0.6951 (2)0.69070 (15)0.0747 (8)
H3510.92500.66300.72860.112*0.879 (2)
H3520.89790.76580.69600.112*0.879 (2)
H3530.94250.67560.65410.112*0.879 (2)
H3540.92690.69570.73360.112*0.121 (2)
H3550.94520.73490.66310.112*0.121 (2)
H3560.89110.62810.67490.112*0.121 (2)
U11U22U33U12U13U23
O10.0304 (6)0.0456 (8)0.0528 (8)0.0006 (6)0.0038 (6)0.0157 (6)
O20.0334 (6)0.0334 (6)0.0292 (6)−0.0044 (5)0.0053 (5)0.0061 (5)
O40.0417 (7)0.0340 (6)0.0204 (5)−0.0006 (5)0.0028 (5)−0.0003 (4)
O70.0323 (6)0.0417 (7)0.0249 (6)0.0017 (5)−0.0070 (5)0.0045 (5)
O100.0406 (7)0.0295 (6)0.0247 (5)0.0027 (5)0.0021 (5)−0.0036 (5)
O130.0326 (6)0.0434 (7)0.0213 (5)−0.0044 (5)0.0012 (5)0.0016 (5)
O190.0385 (7)0.0555 (9)0.0608 (9)0.0109 (6)0.0117 (6)−0.0010 (7)
O300.0419 (7)0.0399 (7)0.0281 (6)−0.0096 (6)−0.0046 (5)0.0007 (5)
N30.0356 (7)0.0259 (7)0.0214 (6)−0.0028 (5)0.0028 (5)0.0005 (5)
N60.0276 (6)0.0275 (6)0.0195 (6)−0.0026 (5)−0.0014 (5)0.0036 (5)
N90.0310 (6)0.0250 (6)0.0214 (6)0.0023 (5)0.0025 (5)0.0016 (5)
N120.0345 (7)0.0341 (7)0.0194 (6)−0.0048 (6)−0.0010 (6)0.0029 (6)
C10.0322 (8)0.0264 (8)0.0242 (7)−0.0015 (6)0.0056 (6)−0.0010 (6)
C20.0307 (8)0.0253 (7)0.0266 (8)−0.0024 (6)0.0031 (6)0.0031 (6)
C40.0279 (8)0.0279 (8)0.0221 (7)−0.0032 (6)0.0024 (6)0.0000 (6)
C50.0281 (8)0.0280 (8)0.0218 (7)−0.0029 (6)0.0021 (6)0.0005 (6)
C70.0276 (8)0.0231 (7)0.0232 (7)0.0001 (6)−0.0037 (6)0.0015 (6)
C80.0248 (7)0.0344 (9)0.0274 (8)0.0021 (6)−0.0012 (6)0.0050 (7)
C100.0276 (7)0.0266 (8)0.0221 (7)−0.0026 (6)0.0041 (6)0.0021 (6)
C110.0344 (8)0.0260 (7)0.0229 (7)−0.0037 (6)−0.0001 (6)0.0037 (6)
C130.0281 (7)0.0302 (8)0.0231 (7)0.0015 (6)0.0001 (6)0.0033 (6)
C140.0397 (9)0.0306 (9)0.0389 (9)0.0019 (7)0.0131 (8)0.0026 (7)
C150.0564 (12)0.0291 (8)0.0341 (9)−0.0044 (8)0.0100 (8)−0.0038 (7)
C160.0487 (10)0.0314 (8)0.0215 (7)−0.0036 (7)0.0060 (7)−0.0034 (6)
C170.0288 (8)0.0390 (9)0.0328 (9)−0.0037 (7)−0.0002 (7)0.0025 (7)
C180.0309 (9)0.0523 (12)0.0498 (11)−0.0022 (8)0.0063 (8)0.0066 (9)
C200.0495 (11)0.0428 (11)0.0444 (11)0.0071 (9)0.0105 (9)−0.0059 (9)
C210.0377 (9)0.0275 (8)0.0334 (9)0.0018 (7)−0.0003 (7)−0.0023 (7)
C220.0458 (11)0.0591 (13)0.0433 (11)0.0242 (10)0.0071 (9)0.0088 (10)
C230.0353 (17)0.0476 (19)0.0471 (18)0.0101 (14)0.0154 (13)0.0004 (14)
C23A0.034 (4)0.043 (4)0.042 (4)0.018 (3)0.011 (3)−0.007 (3)
C240.0481 (10)0.0303 (9)0.0355 (9)0.0071 (8)0.0044 (8)−0.0065 (7)
C250.0419 (9)0.0324 (9)0.0412 (10)0.0041 (7)−0.0051 (8)0.0058 (8)
C260.0391 (9)0.0387 (9)0.0255 (8)−0.0110 (7)0.0016 (7)0.0050 (7)
C270.0286 (7)0.0283 (8)0.0224 (7)0.0036 (6)−0.0003 (6)0.0031 (6)
C280.0317 (8)0.0329 (8)0.0249 (7)−0.0012 (7)0.0028 (6)0.0025 (7)
C290.0390 (9)0.0351 (9)0.0221 (8)−0.0036 (7)0.0025 (7)−0.0005 (7)
C300.0333 (8)0.0287 (8)0.0262 (8)−0.0011 (6)−0.0048 (6)0.0011 (6)
C310.0318 (8)0.0359 (9)0.0269 (8)−0.0043 (7)0.0000 (6)0.0058 (7)
C320.0331 (8)0.0363 (9)0.0222 (7)−0.0020 (7)−0.0006 (6)0.0028 (7)
C330.0332 (9)0.0434 (10)0.0372 (10)−0.0028 (7)−0.0073 (7)0.0011 (8)
S1A0.0586 (4)0.0605 (5)0.0519 (4)−0.0202 (3)−0.0122 (3)0.0035 (3)
S1B0.043 (2)0.068 (3)0.039 (2)−0.002 (2)−0.0026 (17)−0.017 (2)
O30.0570 (10)0.161 (2)0.0465 (10)−0.0138 (13)0.0028 (8)0.0158 (12)
C340.151 (4)0.152 (3)0.0315 (12)0.050 (3)−0.0083 (17)0.0009 (17)
C350.0509 (13)0.0781 (18)0.095 (2)−0.0069 (13)0.0034 (14)−0.0142 (16)
O1—C11.198 (2)C22—C23A1.381 (8)
O2—C11.334 (2)C22—C231.517 (4)
O2—H20.87 (2)C22—H2210.9900
O4—C41.2320 (19)C22—H2220.9900
O7—C71.2393 (18)C22—H2230.9900
O10—C101.2265 (19)C22—H2240.9900
O13—C131.2434 (19)C23—C241.514 (3)
O19—C201.426 (3)C23—H2310.9900
O19—C181.431 (3)C23—H2320.9900
O30—C301.365 (2)C23A—C241.489 (6)
O30—C331.428 (2)C23A—H2330.9900
N3—C41.346 (2)C23A—H2340.9900
N3—C21.464 (2)C24—H2410.9900
N3—C161.479 (2)C24—H2420.9900
N6—C71.337 (2)C24—H2430.9900
N6—C51.4721 (19)C24—H2440.9900
N6—H60.87 (2)C25—H2510.9800
N9—C101.357 (2)C25—H2520.9800
N9—C81.461 (2)C25—H2530.9800
N9—C241.472 (2)C26—H2610.9800
N12—C131.344 (2)C26—H2620.9800
N12—C111.469 (2)C26—H2630.9800
N12—H120.80 (2)C27—C321.392 (2)
C1—C21.528 (2)C27—C281.401 (2)
C2—C141.529 (2)C28—C291.382 (2)
C2—H11.0000C28—H280.9500
C4—C51.549 (2)C29—C301.389 (2)
C5—C171.540 (2)C29—H290.9500
C5—C211.544 (2)C30—C311.393 (2)
C7—C81.517 (2)C31—C321.383 (2)
C8—C221.531 (3)C31—H310.9500
C8—H81.0000C32—H320.9500
C10—C111.537 (2)C33—H3310.9800
C11—C251.534 (2)C33—H3320.9800
C11—C261.537 (2)C33—H3330.9800
C13—C271.489 (2)S1A—O31.452 (2)
C14—C151.520 (3)S1A—C351.759 (3)
C14—H1410.9900S1A—C341.763 (3)
C14—H1420.9900S1B—O31.366 (4)
C15—C161.522 (2)S1B—C351.589 (4)
C15—H1510.9900S1B—C341.803 (4)
C15—H1520.9900C34—H3410.9800
C16—H1610.9900C34—H3420.9800
C16—H1620.9900C34—H3430.9800
C17—C181.512 (3)C34—H3440.9800
C17—H1710.9900C34—H3450.9800
C17—H1720.9900C34—H3460.9800
C18—H1810.9900C35—H3510.9800
C18—H1820.9900C35—H3520.9800
C20—C211.515 (3)C35—H3530.9800
C20—H2010.9900C35—H3540.9800
C20—H2020.9900C35—H3550.9800
C21—H2110.9900C35—H3560.9800
C21—H2120.9900
C1—O2—H2108.0 (16)C8—C22—H221110.5
C20—O19—C18110.20 (15)C23—C22—H222110.5
C30—O30—C33117.22 (13)C8—C22—H222110.5
C4—N3—C2118.99 (12)H221—C22—H222108.7
C4—N3—C16129.66 (13)C23A—C22—H223110.7
C2—N3—C16111.25 (13)C8—C22—H223110.7
C7—N6—C5121.26 (13)C23A—C22—H224110.7
C7—N6—H6119.4 (13)C8—C22—H224110.7
C5—N6—H6117.0 (13)H223—C22—H224108.8
C10—N9—C8117.53 (13)C24—C23—C22103.9 (2)
C10—N9—C24130.52 (13)C24—C23—H231111.0
C8—N9—C24111.05 (13)C22—C23—H231111.0
C13—N12—C11121.47 (14)C24—C23—H232111.0
C13—N12—H12119.0 (16)C22—C23—H232111.0
C11—N12—H12117.3 (16)H231—C23—H232109.0
O1—C1—O2124.53 (15)C22—C23A—C24112.5 (5)
O1—C1—C2125.60 (14)C22—C23A—H233109.1
O2—C1—C2109.84 (14)C24—C23A—H233109.1
N3—C2—C1110.40 (13)C22—C23A—H234109.1
N3—C2—C14103.54 (12)C24—C23A—H234109.1
C1—C2—C14110.24 (13)H233—C23A—H234107.8
N3—C2—H1110.8N9—C24—C23A102.1 (3)
C1—C2—H1110.8N9—C24—C23102.94 (17)
C14—C2—H1110.8N9—C24—H241111.2
O4—C4—N3120.73 (14)C23—C24—H241111.2
O4—C4—C5119.81 (14)N9—C24—H242111.2
N3—C4—C5119.11 (13)C23—C24—H242111.2
N6—C5—C17108.49 (12)H241—C24—H242109.1
N6—C5—C21107.72 (13)N9—C24—H243111.3
C17—C5—C21108.02 (13)C23A—C24—H243111.3
N6—C5—C4111.80 (13)N9—C24—H244111.3
C17—C5—C4110.03 (13)C23A—C24—H244111.3
C21—C5—C4110.67 (13)H243—C24—H244109.2
O7—C7—N6121.95 (15)C11—C25—H251109.5
O7—C7—C8119.43 (14)C11—C25—H252109.5
N6—C7—C8118.61 (13)H251—C25—H252109.5
N9—C8—C7114.92 (12)C11—C25—H253109.5
N9—C8—C22104.45 (14)H251—C25—H253109.5
C7—C8—C22110.77 (14)H252—C25—H253109.5
N9—C8—H8108.8C11—C26—H261109.5
C7—C8—H8108.8C11—C26—H262109.5
C22—C8—H8108.8H261—C26—H262109.5
O10—C10—N9120.34 (14)C11—C26—H263109.5
O10—C10—C11119.60 (14)H261—C26—H263109.5
N9—C10—C11119.83 (13)H262—C26—H263109.5
N12—C11—C25108.71 (14)C32—C27—C28118.65 (15)
N12—C11—C26109.42 (13)C32—C27—C13117.50 (13)
C25—C11—C26110.16 (14)C28—C27—C13123.82 (14)
N12—C11—C10112.28 (12)C29—C28—C27119.87 (15)
C25—C11—C10109.54 (13)C29—C28—H28120.1
C26—C11—C10106.72 (13)C27—C28—H28120.1
O13—C13—N12120.45 (15)C28—C29—C30120.72 (15)
O13—C13—C27120.77 (14)C28—C29—H29119.6
N12—C13—C27118.77 (14)C30—C29—H29119.6
C15—C14—C2102.88 (14)O30—C30—C29116.00 (14)
C15—C14—H141111.2O30—C30—C31123.90 (15)
C2—C14—H141111.2C29—C30—C31120.10 (15)
C15—C14—H142111.2C32—C31—C30118.86 (15)
C2—C14—H142111.2C32—C31—H31120.6
H141—C14—H142109.1C30—C31—H31120.6
C14—C15—C16102.97 (15)C31—C32—C27121.79 (15)
C14—C15—H151111.2C31—C32—H32119.1
C16—C15—H151111.2C27—C32—H32119.1
C14—C15—H152111.2O30—C33—H331109.5
C16—C15—H152111.2O30—C33—H332109.5
H151—C15—H152109.1H331—C33—H332109.5
N3—C16—C15103.33 (13)O30—C33—H333109.5
N3—C16—H161111.1H331—C33—H333109.5
C15—C16—H161111.1H332—C33—H333109.5
N3—C16—H162111.1O3—S1A—C35109.95 (13)
C15—C16—H162111.1O3—S1A—C34105.67 (16)
H161—C16—H162109.1C35—S1A—C3497.1 (2)
C18—C17—C5111.38 (14)O3—S1B—C35126.1 (4)
C18—C17—H171109.4O3—S1B—C34107.5 (3)
C5—C17—H171109.4C35—S1B—C34102.0 (3)
C18—C17—H172109.4S1A—C34—H341109.5
C5—C17—H172109.4S1A—C34—H342109.5
H171—C17—H172108.0H341—C34—H342109.5
O19—C18—C17111.44 (16)S1A—C34—H343109.5
O19—C18—H181109.3H341—C34—H343109.5
C17—C18—H181109.3H342—C34—H343109.5
O19—C18—H182109.3S1B—C34—H344109.5
C17—C18—H182109.3S1B—C34—H345109.5
H181—C18—H182108.0H344—C34—H345109.5
O19—C20—C21111.66 (15)S1B—C34—H346109.5
O19—C20—H201109.3H344—C34—H346109.5
C21—C20—H201109.3H345—C34—H346109.5
O19—C20—H202109.3S1A—C35—H351109.5
C21—C20—H202109.3S1A—C35—H352109.5
H201—C20—H202107.9H351—C35—H352109.5
C20—C21—C5114.20 (15)S1A—C35—H353109.5
C20—C21—H211108.7H351—C35—H353109.5
C5—C21—H211108.7H352—C35—H353109.5
C20—C21—H212108.7S1B—C35—H354109.5
C5—C21—H212108.7S1B—C35—H355109.5
H211—C21—H212107.6H354—C35—H355109.5
C23A—C22—C8105.1 (3)S1B—C35—H356109.5
C23—C22—C8106.09 (17)H354—C35—H356109.5
C23—C22—H221110.5H355—C35—H356109.5
C4—N3—C2—C1−77.56 (18)C21—C5—C17—C1849.02 (19)
C16—N3—C2—C1105.76 (15)C4—C5—C17—C18−71.89 (18)
C4—N3—C2—C14164.46 (14)C20—O19—C18—C1763.9 (2)
C16—N3—C2—C14−12.22 (18)C5—C17—C18—O19−59.5 (2)
O1—C1—C2—N3−9.7 (2)C18—O19—C20—C21−59.6 (2)
O2—C1—C2—N3172.24 (12)O19—C20—C21—C552.7 (2)
O1—C1—C2—C14104.13 (19)N6—C5—C21—C20−163.52 (15)
O2—C1—C2—C14−73.97 (17)C17—C5—C21—C20−46.52 (19)
C2—N3—C4—O4−3.6 (2)C4—C5—C21—C2073.99 (18)
C16—N3—C4—O4172.40 (16)N9—C8—C22—C23A19.5 (6)
C2—N3—C4—C5169.63 (13)C7—C8—C22—C23A−104.8 (6)
C16—N3—C4—C5−14.4 (2)N9—C8—C22—C23−12.2 (3)
C7—N6—C5—C17175.20 (14)C7—C8—C22—C23−136.4 (2)
C7—N6—C5—C21−68.11 (18)C23A—C22—C23—C24−63.7 (4)
C7—N6—C5—C453.69 (19)C8—C22—C23—C2428.7 (3)
O4—C4—C5—N6−133.33 (15)C23—C22—C23A—C2473.4 (7)
N3—C4—C5—N653.40 (19)C8—C22—C23A—C24−22.8 (9)
O4—C4—C5—C17106.06 (17)C10—N9—C24—C23A−171.4 (5)
N3—C4—C5—C17−67.22 (18)C8—N9—C24—C23A−2.8 (5)
O4—C4—C5—C21−13.2 (2)C10—N9—C24—C23−140.9 (2)
N3—C4—C5—C21173.48 (14)C8—N9—C24—C2327.7 (3)
C5—N6—C7—O7−11.3 (2)C22—C23A—C24—N916.5 (9)
C5—N6—C7—C8169.78 (14)C22—C23A—C24—C23−78.4 (10)
C10—N9—C8—C7−78.00 (18)C22—C23—C24—N9−33.8 (3)
C24—N9—C8—C7111.71 (16)C22—C23—C24—C23A58.0 (6)
C10—N9—C8—C22160.44 (15)O13—C13—C27—C32−1.6 (2)
C24—N9—C8—C22−9.85 (19)N12—C13—C27—C32178.69 (15)
O7—C7—C8—N9176.18 (14)O13—C13—C27—C28−179.64 (16)
N6—C7—C8—N9−4.9 (2)N12—C13—C27—C280.7 (2)
O7—C7—C8—C22−65.8 (2)C32—C27—C28—C29−0.3 (2)
N6—C7—C8—C22113.20 (17)C13—C27—C28—C29177.63 (16)
C8—N9—C10—O106.6 (2)C27—C28—C29—C300.1 (3)
C24—N9—C10—O10174.63 (16)C33—O30—C30—C29163.21 (15)
C8—N9—C10—C11−167.91 (13)C33—O30—C30—C31−16.9 (2)
C24—N9—C10—C110.1 (2)C28—C29—C30—O30−179.63 (16)
C13—N12—C11—C2573.25 (18)C28—C29—C30—C310.5 (3)
C13—N12—C11—C26−166.40 (15)O30—C30—C31—C32179.34 (16)
C13—N12—C11—C10−48.1 (2)C29—C30—C31—C32−0.8 (3)
O10—C10—C11—N12137.80 (15)C30—C31—C32—C270.5 (3)
N9—C10—C11—N12−47.67 (19)C28—C27—C32—C310.0 (2)
O10—C10—C11—C2516.9 (2)C13—C27—C32—C31−178.07 (15)
N9—C10—C11—C25−168.55 (14)C35—S1B—O3—S1A−59.6 (3)
O10—C10—C11—C26−102.32 (17)C34—S1B—O3—S1A60.4 (2)
N9—C10—C11—C2672.21 (17)C35—S1A—O3—S1B42.1 (3)
C11—N12—C13—O1311.4 (2)C34—S1A—O3—S1B−61.7 (3)
C11—N12—C13—C27−168.90 (14)O3—S1A—C34—S1B54.6 (2)
N3—C2—C14—C1532.26 (17)C35—S1A—C34—S1B−58.5 (2)
C1—C2—C14—C15−85.84 (16)O3—S1B—C34—S1A−61.0 (3)
C2—C14—C15—C16−40.31 (18)C35—S1B—C34—S1A73.3 (3)
C4—N3—C16—C15171.04 (17)O3—S1B—C35—S1A56.1 (3)
C2—N3—C16—C15−12.74 (19)C34—S1B—C35—S1A−66.3 (2)
C14—C15—C16—N332.57 (19)O3—S1A—C35—S1B−42.1 (3)
N6—C5—C17—C18165.52 (15)C34—S1A—C35—S1B67.4 (3)
D—H···AD—HH···AD···AD—H···A
O2—H2···O7i0.87 (2)1.81 (3)2.6669 (17)168 (2)
N6—H6···O130.87 (2)2.19 (2)3.0468 (17)169.5 (18)
N12—H12···O4ii0.80 (2)2.37 (2)3.1247 (18)156 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O2—H2⋯O7i 0.87 (2)1.81 (3)2.6669 (17)168 (2)
N6—H6⋯O130.87 (2)2.19 (2)3.0468 (17)169.5 (18)
N12—H12⋯O4ii 0.80 (2)2.37 (2)3.1247 (18)156 (2)

Symmetry codes: (i) ; (ii) .

  10 in total

1.  Absolute structure and absolute configuration.

Authors: 
Journal:  Acta Crystallogr A       Date:  1999-09-01       Impact factor: 2.290

2.  The Peptaibol Database: a database for sequences and structures of naturally occurring peptaibols.

Authors:  Lee Whitmore; B A Wallace
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 4.  Aib residues in peptaibiotics and synthetic sequences: analysis of nonhelical conformations.

Authors:  Subrayashastry Aravinda; Narayanaswamy Shamala; Padmanabhan Balaram
Journal:  Chem Biodivers       Date:  2008-07       Impact factor: 2.408

5.  Conformations of helical Aib peptides containing a pair of L-amino acid and D-amino acid.

Authors:  Yosuke Demizu; Yu-U Yabuki; Mitsunobu Doi; Yukiko Sato; Masakazu Tanaka; Masaaki Kurihara
Journal:  J Pept Sci       Date:  2012-05-22       Impact factor: 1.905

6.  Total synthesis of the peptaibols hypomurocin A3 and hypomurocin A5, and their conformation analysis.

Authors:  Nicolas Pradeille; Manuel Tzouros; Kerstin Möhle; Anthony Linden; Heinz Heimgartner
Journal:  Chem Biodivers       Date:  2012-11       Impact factor: 2.408

Review 7.  The stereochemistry of peptides containing alpha-aminoisobutyric acid.

Authors:  B V Prasad; P Balaram
Journal:  CRC Crit Rev Biochem       Date:  1984

8.  Conformational manifold of alpha-aminoisobutyric acid (Aib) containing alanine-based tripeptides in aqueous solution explored by vibrational spectroscopy, electronic circular dichroism spectroscopy, and molecular dynamics simulations.

Authors:  Reinhard Schweitzer-Stenner; Widalys Gonzales; Gregory T Bourne; Jianwen A Feng; Garland R Marshall
Journal:  J Am Chem Soc       Date:  2007-10-05       Impact factor: 15.419

9.  The 'azirine/oxazolone method' in peptaibol synthesis: preparation of a derivative of trichotoxin A-50 (G).

Authors:  Werner Altherr; Anthony Linden; Heinz Heimgartner
Journal:  Chem Biodivers       Date:  2007-06       Impact factor: 2.408

10.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  10 in total

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