Literature DB >> 14681489

The Peptaibol Database: a database for sequences and structures of naturally occurring peptaibols.

Lee Whitmore1, B A Wallace.   

Abstract

The Peptaibol Database is a sequence and structure resource for the unusual class of peptides known as peptaibols. These peptides exhibit antibiotic and membrane channel-forming activities. The database includes sequence, biological source and bibliographical data for the naturally occurring peptaibols. Information is also collated for the growing number of peptaibol 3D structures determined by either crystallography or NMR spectroscopy. The database can be obtained as a whole or can be queried by name, group, sequence motif, biological origin and/or literature reference. The Peptaibol Database can be freely accessed at http://www.cryst.bbk.ac.uk/peptaibol.

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Year:  2004        PMID： 14681489      PMCID： PMC308811          DOI： 10.1093/nar/gkh077

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  8 in total

Review 1.  Peptaibols: models for ion channels.

Authors:  J K Chugh; B A Wallace
Journal:  Biochem Soc Trans       Date:  2001-08       Impact factor: 5.407

2.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

3.  The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003.

Authors:  Brigitte Boeckmann; Amos Bairoch; Rolf Apweiler; Marie-Claude Blatter; Anne Estreicher; Elisabeth Gasteiger; Maria J Martin; Karine Michoud; Claire O'Donovan; Isabelle Phan; Sandrine Pilbout; Michel Schneider
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

4.  The Protein Data Bank and structural genomics.

Authors:  John Westbrook; Zukang Feng; Li Chen; Huanwang Yang; Helen M Berman
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

5.  Synthetic antibiotic peptides database.

Authors:  David Wade; Jukka Englund
Journal:  Protein Pept Lett       Date:  2002-02       Impact factor: 1.890

6.  The EBI SRS server-new features.

Authors:  Evgeny M Zdobnov; Rodrigo Lopez; Rolf Apweiler; Thure Etzold
Journal:  Bioinformatics       Date:  2002-08       Impact factor: 6.937

7.  Analysis of peptaibol sequence composition: implications for in vivo synthesis and channel formation.

Authors:  L Whitmore; B A Wallace
Journal:  Eur Biophys J       Date:  2003-10-08       Impact factor: 1.733

8.  Identification of peptaibols from Trichoderma virens and cloning of a peptaibol synthetase.

Authors:  Aric Wiest; Darlene Grzegorski; Bi-Wen Xu; Christophe Goulard; Sylvie Rebuffat; Daniel J Ebbole; Bernard Bodo; Charles Kenerley
Journal:  J Biol Chem       Date:  2002-03-21       Impact factor: 5.157
  8 in total
  40 in total

1.  In situ mass spectrometry monitoring of fungal cultures led to the identification of four peptaibols with a rare threonine residue.

Authors:  Vincent P Sica; Evan R Rees; Huzefa A Raja; José Rivera-Chávez; Joanna E Burdette; Cedric J Pearce; Nicholas H Oberlies
Journal:  Phytochemistry       Date:  2017-07-31       Impact factor: 4.072

2.  Conductance studies on trichotoxin_A50E and implications for channel structure.

Authors:  H Duclohier; G M Alder; C L Bashford; H Brückner; J K Chugh; B A Wallace
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

3.  Collection of antimicrobial peptides database and its derivatives: Applications and beyond.

Authors:  Faiza Hanif Waghu; Susan Idicula-Thomas
Journal:  Protein Sci       Date:  2019-09-30       Impact factor: 6.725

4.  Peptaibols, tetramic acid derivatives, isocoumarins, and sesquiterpenes from a Bionectria sp. (MSX 47401).

Authors:  Mario Figueroa; Huzefa Raja; Joseph O Falkinham; Audrey F Adcock; David J Kroll; Mansukh C Wani; Cedric J Pearce; Nicholas H Oberlies
Journal:  J Nat Prod       Date:  2013-06-19       Impact factor: 4.050

5.  Unique amalgamation of primary and secondary structural elements transform peptaibols into potent bioactive cell-penetrating peptides.

Authors:  Lin Du; April L Risinger; Carter A Mitchell; Jianlan You; Blake W Stamps; Ning Pan; Jarrod B King; Jean C Bopassa; Susan I V Judge; Zhibo Yang; Bradley S Stevenson; Robert H Cichewicz
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-10       Impact factor: 11.205

6.  Modeling the secondary structures of the peptaibols antiamoebin I and zervamicin II modified with D-amino acids and proline analogues.

Authors:  Tarsila G Castro; Nuno M Micaêlo; Manuel Melle-Franco
Journal:  J Mol Model       Date:  2017-10-16       Impact factor: 1.810

7.  Improved methods for classification, prediction, and design of antimicrobial peptides.

Authors:  Guangshun Wang
Journal:  Methods Mol Biol       Date:  2015

Review 8.  Fungal genus Hypocrea/Trichoderma: from barcodes to biodiversity.

Authors:  Christian P Kubicek; Monika Komon-Zelazowska; Irina S Druzhinina
Journal:  J Zhejiang Univ Sci B       Date:  2008-10       Impact factor: 3.066

9.  APD2: the updated antimicrobial peptide database and its application in peptide design.

Authors:  Guangshun Wang; Xia Li; Zhe Wang
Journal:  Nucleic Acids Res       Date:  2008-10-28       Impact factor: 16.971

10.  CAMP: a useful resource for research on antimicrobial peptides.

Authors:  Shaini Thomas; Shreyas Karnik; Ram Shankar Barai; V K Jayaraman; Susan Idicula-Thomas
Journal:  Nucleic Acids Res       Date:  2009-11-18       Impact factor: 16.971
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