Literature DB >> 23476571

5-(4-Fluoro-phen-yl)-3-(4-methyl-phen-yl)-4,5-dihydro-1H-pyrazole-1-carbothio-amide.

Bakr F Abdel-Wahab1, Hanan A Mohamed, Rizk E Khidre, Seik Weng Ng, Edward R T Tiekink.   

Abstract

The central pyrazole ring in the title compound, C17H16FN3S, adopts an envelope conformation with the methine C atom bearing the 4-fluoro-phenyl substituent as the flap atom. Whereas the tolyl ring is slightly twisted out of the least-squares plane through the pyrazole ring [dihedral angle = 13.51 (11)°], the fluoro-benzene ring is almost perpendicular [dihedral angle = 80.21 (11)°]. The thio-amide group is almost coplanar with the N-N bond of the ring [N-N-C-N torsion angle = 1.2 (3)°] and the amine group forms an intra-molecular hydrogen bond with a ring N atom. In the crystal, supra-molecular double layers in the bc plane are formed via N-H⋯S, N-H⋯F and C-H⋯F inter-actions.

Entities:  

Year:  2013        PMID: 23476571      PMCID: PMC3588501          DOI: 10.1107/S1600536813004194

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of pyrazolin-1-yl­thia­zoles, see: Abdel-Wahab et al. (2009 ▶, 2012 ▶); Chimenti et al. (2010 ▶). For related structures, see: Nonthason et al. (2011 ▶); Chantra­promma et al. (2012 ▶).

Experimental

Crystal data

C17H16FN3S M = 313.39 Monoclinic, a = 14.4154 (10) Å b = 11.3197 (9) Å c = 9.5575 (8) Å β = 103.991 (8)° V = 1513.3 (2) Å3 Z = 4 Mo Kα radiation μ = 0.22 mm−1 T = 295 K 0.30 × 0.20 × 0.10 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.772, T max = 1.000 9303 measured reflections 3500 independent reflections 2370 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.122 S = 1.04 3500 reflections 200 parameters H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.26 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813004194/hg5291sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813004194/hg5291Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813004194/hg5291Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H16FN3SF(000) = 656
Mr = 313.39Dx = 1.376 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2000 reflections
a = 14.4154 (10) Åθ = 2.9–27.5°
b = 11.3197 (9) ŵ = 0.22 mm1
c = 9.5575 (8) ÅT = 295 K
β = 103.991 (8)°Prism, colourless
V = 1513.3 (2) Å30.30 × 0.20 × 0.10 mm
Z = 4
Agilent SuperNova Dual diffractometer with an Atlas detector3500 independent reflections
Radiation source: SuperNova (Mo) X-ray Source2370 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.038
Detector resolution: 10.4041 pixels mm-1θmax = 27.6°, θmin = 2.9°
ω scanh = −18→17
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −10→14
Tmin = 0.772, Tmax = 1.000l = −12→12
9303 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.122H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0448P)2 + 0.2973P] where P = (Fo2 + 2Fc2)/3
3500 reflections(Δ/σ)max < 0.001
200 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.48991 (4)0.33372 (5)0.33938 (6)0.04739 (19)
F10.76993 (11)0.35963 (12)−0.10409 (14)0.0659 (4)
N10.63664 (12)0.46879 (14)0.46526 (17)0.0384 (4)
N20.71143 (11)0.50005 (15)0.58117 (17)0.0391 (4)
N30.60198 (14)0.32075 (15)0.60342 (19)0.0491 (5)
H310.64970.34620.67270.059*
H320.56840.25910.61810.059*
C10.73573 (16)0.40770 (19)0.0050 (2)0.0445 (5)
C20.77815 (16)0.3771 (2)0.1434 (2)0.0483 (6)
H20.83060.32660.16370.058*
C30.74165 (14)0.42262 (19)0.2528 (2)0.0435 (5)
H30.76970.40240.34790.052*
C40.66378 (13)0.49796 (17)0.2226 (2)0.0341 (4)
C50.62418 (15)0.52828 (18)0.0812 (2)0.0416 (5)
H50.57280.58040.06020.050*
C60.65938 (16)0.48273 (19)−0.0307 (2)0.0469 (5)
H60.63200.5025−0.12620.056*
C70.62560 (14)0.55094 (17)0.3424 (2)0.0376 (5)
H70.55840.57360.30660.045*
C80.68480 (15)0.65640 (18)0.4168 (2)0.0406 (5)
H8A0.72670.68650.35940.049*
H8B0.64390.71980.43470.049*
C90.74100 (14)0.60325 (18)0.5553 (2)0.0378 (5)
C100.82031 (14)0.65987 (18)0.6583 (2)0.0381 (5)
C110.87678 (15)0.5981 (2)0.7726 (2)0.0486 (6)
H110.86580.51790.78260.058*
C120.94914 (17)0.6537 (2)0.8718 (3)0.0526 (6)
H120.98670.61010.94700.063*
C130.96669 (15)0.7734 (2)0.8614 (2)0.0470 (5)
C140.91224 (16)0.8339 (2)0.7453 (3)0.0519 (6)
H140.92430.91360.73420.062*
C150.83985 (15)0.7787 (2)0.6447 (2)0.0470 (5)
H150.80410.82160.56730.056*
C161.04181 (18)0.8345 (2)0.9752 (3)0.0673 (8)
H16A1.07510.89100.93030.101*
H16B1.08640.77721.02640.101*
H16C1.01190.87441.04140.101*
C170.58067 (14)0.37547 (17)0.4763 (2)0.0365 (5)
U11U22U33U12U13U23
S10.0422 (3)0.0508 (3)0.0468 (3)−0.0061 (3)0.0063 (2)−0.0054 (3)
F10.0882 (10)0.0730 (9)0.0427 (8)0.0155 (8)0.0279 (7)−0.0051 (7)
N10.0401 (9)0.0438 (10)0.0305 (8)−0.0056 (8)0.0071 (7)−0.0003 (7)
N20.0387 (9)0.0462 (10)0.0315 (9)−0.0038 (8)0.0066 (7)−0.0025 (8)
N30.0545 (11)0.0474 (10)0.0437 (10)−0.0086 (9)0.0088 (9)0.0077 (8)
C10.0549 (13)0.0448 (12)0.0370 (11)−0.0018 (11)0.0170 (10)−0.0035 (10)
C20.0448 (12)0.0556 (13)0.0442 (12)0.0135 (11)0.0099 (10)0.0022 (11)
C30.0438 (11)0.0547 (13)0.0296 (10)0.0095 (11)0.0043 (9)0.0018 (10)
C40.0342 (10)0.0357 (10)0.0315 (10)−0.0021 (9)0.0062 (8)0.0008 (8)
C50.0433 (11)0.0431 (11)0.0346 (11)0.0075 (10)0.0020 (9)0.0040 (9)
C60.0594 (14)0.0487 (12)0.0283 (10)0.0028 (11)0.0023 (10)0.0040 (9)
C70.0360 (10)0.0428 (11)0.0325 (10)0.0030 (9)0.0056 (8)0.0044 (9)
C80.0455 (11)0.0403 (11)0.0360 (11)0.0006 (10)0.0100 (9)−0.0010 (9)
C90.0370 (10)0.0422 (11)0.0359 (10)0.0003 (10)0.0124 (9)−0.0027 (9)
C100.0362 (10)0.0427 (11)0.0372 (11)−0.0007 (9)0.0124 (9)−0.0038 (9)
C110.0509 (13)0.0447 (12)0.0469 (13)−0.0063 (11)0.0052 (11)−0.0013 (10)
C120.0521 (13)0.0542 (14)0.0449 (13)0.0011 (12)−0.0010 (11)−0.0012 (11)
C130.0385 (11)0.0510 (13)0.0509 (13)0.0004 (10)0.0098 (10)−0.0134 (11)
C140.0434 (12)0.0413 (12)0.0695 (16)−0.0045 (11)0.0106 (12)−0.0052 (11)
C150.0423 (12)0.0465 (12)0.0513 (13)0.0009 (10)0.0093 (10)0.0026 (11)
C160.0527 (14)0.0653 (16)0.0745 (18)−0.0040 (13)−0.0025 (13)−0.0231 (14)
C170.0384 (10)0.0378 (11)0.0365 (11)0.0033 (9)0.0151 (9)−0.0034 (9)
S1—C171.679 (2)C7—C81.538 (3)
F1—C11.369 (2)C7—H70.9800
N1—C171.349 (2)C8—C91.501 (3)
N1—N21.392 (2)C8—H8A0.9700
N1—C71.476 (2)C8—H8B0.9700
N2—C91.288 (3)C9—C101.464 (3)
N3—C171.332 (2)C10—C111.383 (3)
N3—H310.8800C10—C151.386 (3)
N3—H320.8800C11—C121.381 (3)
C1—C21.361 (3)C11—H110.9300
C1—C61.367 (3)C12—C131.386 (3)
C2—C31.379 (3)C12—H120.9300
C2—H20.9300C13—C141.377 (3)
C3—C41.383 (3)C13—C161.505 (3)
C3—H30.9300C14—C151.385 (3)
C4—C51.377 (3)C14—H140.9300
C4—C71.509 (3)C15—H150.9300
C5—C61.389 (3)C16—H16A0.9600
C5—H50.9300C16—H16B0.9600
C6—H60.9300C16—H16C0.9600
C17—N1—N2119.99 (16)C9—C8—H8B111.3
C17—N1—C7127.16 (16)C7—C8—H8B111.3
N2—N1—C7112.76 (15)H8A—C8—H8B109.2
C9—N2—N1107.83 (16)N2—C9—C10120.57 (18)
C17—N3—H31120.0N2—C9—C8113.58 (17)
C17—N3—H32120.0C10—C9—C8125.81 (18)
H31—N3—H32120.0C11—C10—C15118.05 (19)
C2—C1—F1118.6 (2)C11—C10—C9121.63 (19)
C2—C1—C6123.1 (2)C15—C10—C9120.31 (19)
F1—C1—C6118.25 (19)C12—C11—C10121.0 (2)
C1—C2—C3118.5 (2)C12—C11—H11119.5
C1—C2—H2120.7C10—C11—H11119.5
C3—C2—H2120.7C11—C12—C13121.1 (2)
C2—C3—C4120.74 (19)C11—C12—H12119.4
C2—C3—H3119.6C13—C12—H12119.4
C4—C3—H3119.6C14—C13—C12117.8 (2)
C5—C4—C3118.76 (18)C14—C13—C16121.6 (2)
C5—C4—C7120.31 (17)C12—C13—C16120.6 (2)
C3—C4—C7120.86 (17)C13—C14—C15121.5 (2)
C4—C5—C6121.39 (19)C13—C14—H14119.3
C4—C5—H5119.3C15—C14—H14119.3
C6—C5—H5119.3C14—C15—C10120.6 (2)
C1—C6—C5117.44 (19)C14—C15—H15119.7
C1—C6—H6121.3C10—C15—H15119.7
C5—C6—H6121.3C13—C16—H16A109.5
N1—C7—C4111.36 (16)C13—C16—H16B109.5
N1—C7—C8100.38 (15)H16A—C16—H16B109.5
C4—C7—C8113.31 (16)C13—C16—H16C109.5
N1—C7—H7110.5H16A—C16—H16C109.5
C4—C7—H7110.5H16B—C16—H16C109.5
C8—C7—H7110.5N3—C17—N1115.16 (18)
C9—C8—C7102.56 (16)N3—C17—S1122.98 (16)
C9—C8—H8A111.3N1—C17—S1121.85 (15)
C7—C8—H8A111.3
C17—N1—N2—C9−167.33 (17)N1—N2—C9—C10−179.64 (16)
C7—N1—N2—C99.5 (2)N1—N2—C9—C82.3 (2)
F1—C1—C2—C3−177.94 (19)C7—C8—C9—N2−12.1 (2)
C6—C1—C2—C30.9 (3)C7—C8—C9—C10169.92 (18)
C1—C2—C3—C4−0.2 (3)N2—C9—C10—C1111.6 (3)
C2—C3—C4—C5−1.0 (3)C8—C9—C10—C11−170.55 (19)
C2—C3—C4—C7−178.1 (2)N2—C9—C10—C15−167.37 (19)
C3—C4—C5—C61.5 (3)C8—C9—C10—C1510.5 (3)
C7—C4—C5—C6178.58 (19)C15—C10—C11—C121.4 (3)
C2—C1—C6—C5−0.4 (3)C9—C10—C11—C12−177.6 (2)
F1—C1—C6—C5178.42 (19)C10—C11—C12—C130.9 (4)
C4—C5—C6—C1−0.8 (3)C11—C12—C13—C14−2.7 (4)
C17—N1—C7—C4−79.3 (2)C11—C12—C13—C16176.3 (2)
N2—N1—C7—C4104.12 (18)C12—C13—C14—C152.3 (3)
C17—N1—C7—C8160.42 (18)C16—C13—C14—C15−176.7 (2)
N2—N1—C7—C8−16.1 (2)C13—C14—C15—C10−0.1 (3)
C5—C4—C7—N1149.56 (18)C11—C10—C15—C14−1.8 (3)
C3—C4—C7—N1−33.4 (2)C9—C10—C15—C14177.28 (19)
C5—C4—C7—C8−98.2 (2)N2—N1—C17—N31.2 (3)
C3—C4—C7—C878.8 (2)C7—N1—C17—N3−175.12 (18)
N1—C7—C8—C915.56 (19)N2—N1—C17—S1−179.70 (14)
C4—C7—C8—C9−103.26 (18)C7—N1—C17—S14.0 (3)
D—H···AD—HH···AD···AD—H···A
N3—H31···N20.882.232.611 (3)106
N3—H31···F1i0.882.413.255 (2)162
N3—H32···S1ii0.882.833.538 (2)138
C16—H16B···F1iii0.962.553.478 (3)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H31⋯N20.882.232.611 (3)106
N3—H31⋯F1i 0.882.413.255 (2)162
N3—H32⋯S1ii 0.882.833.538 (2)138
C16—H16B⋯F1iii 0.962.553.478 (3)163

Symmetry codes: (i) ; (ii) ; (iii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Design and synthesis of new 4-pyrazolin-3-yl-1,2,3-triazoles and 1,2,3-triazol-4-yl-pyrazolin-1-ylthiazoles as potential antimicrobial agents.

Authors:  Bakr F Abdel-Wahab; Ehab Abdel-Latif; Hanan A Mohamed; Ghada E A Awad
Journal:  Eur J Med Chem       Date:  2012-03-23       Impact factor: 6.514

3.  Synthesis and antimicrobial evaluation of 1-(benzofuran-2-yl)-4-nitro-3-arylbutan-1-ones and 3-(benzofuran-2-yl)-4,5-dihydro-5-aryl-1-[4-(aryl)-1,3-thiazol-2-yl]-1H-pyrazoles.

Authors:  Bakr F Abdel-Wahab; Hatem A Abdel-Aziz; Essam M Ahmed
Journal:  Eur J Med Chem       Date:  2008-10-02       Impact factor: 6.514

4.  Synthesis and inhibitory activity against human monoamine oxidase of N1-thiocarbamoyl-3,5-di(hetero)aryl-4,5-dihydro-(1H)-pyrazole derivatives.

Authors:  Franco Chimenti; Simone Carradori; Daniela Secci; Adriana Bolasco; Bruna Bizzarri; Paola Chimenti; Arianna Granese; Matilde Yáñez; Francisco Orallo
Journal:  Eur J Med Chem       Date:  2009-11-06       Impact factor: 6.514

5.  5-(4-Meth-oxy-phen-yl)-3-(pyridin-2-yl)-4,5-dihydro-1H-pyrazole-1-carbothio-amide.

Authors:  Phonpawee Nonthason; Thitipone Suwunwong; Suchada Chantrapromma; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-30

6.  5-(4-Eth-oxy-phen-yl)-3-(pyridin-2-yl)-4,5-dihydro-1H-pyrazole-1-carbothio-amide.

Authors:  Suchada Chantrapromma; Phonpawee Nonthason; Thitipone Suwunwong; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-24
  6 in total
  1 in total

1.  3-(4-Chloro-phen-yl)-5-(4-fluoro-phen-yl)-4,5-dihydro-1H-pyrazole-1-carbothio-amide.

Authors:  Bakr F Abdel-Wahab; Hanan A Mohamed; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-02-20
  1 in total

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