Literature DB >> 23476591

3-(4-Chloro-phen-yl)-5-(4-fluoro-phen-yl)-4,5-dihydro-1H-pyrazole-1-carbothio-amide.

Bakr F Abdel-Wahab1, Hanan A Mohamed, Seik Weng Ng, Edward R T Tiekink.   

Abstract

In the title compound, C16H13ClFN3S, the pyrazole ring adopts an envelope conformation with the methine C atom being the flap atom. The chloro- and fluoro-benzene rings are twisted out of the plane of the pyrazole ring [dihedral angles = 15.12 (11) and 80.55 (10)°, respectively]. The amine group is orientated towards a ring N atom, forming an intra-molecular N-H⋯N hydrogen bond. This H atom also forms a hydrogen bond to the F atom, which along with N-H⋯S hydrogen bonding leads to a supra-molecular chain along the c axis. Connections between chains of the type Cl⋯π lead to a layer in the bc plane.

Entities:  

Year:  2013        PMID: 23476591      PMCID: PMC3588515          DOI: 10.1107/S1600536813004492

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of pyrazolin-1-yl­thia­zoles, see: Abdel-Wahab et al. (2009 ▶, 2012 ▶); Chimenti et al. (2010 ▶). For related structures, see: Chantrapromma et al. (2012 ▶); Abdel-Wahab et al. (2013 ▶).

Experimental

Crystal data

C16H13ClFN3S M = 333.80 Monoclinic, a = 14.5402 (9) Å b = 11.2700 (8) Å c = 9.5169 (6) Å β = 103.850 (6)° V = 1514.17 (17) Å3 Z = 4 Mo Kα radiation μ = 0.40 mm−1 T = 295 K 0.40 × 0.30 × 0.20 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.898, T max = 1.000 10191 measured reflections 3478 independent reflections 2570 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.111 S = 1.01 3478 reflections 199 parameters H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.28 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813004492/hg5293sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813004492/hg5293Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813004492/hg5293Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H13ClFN3SF(000) = 688
Mr = 333.80Dx = 1.464 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2717 reflections
a = 14.5402 (9) Åθ = 2.9–27.5°
b = 11.2700 (8) ŵ = 0.40 mm1
c = 9.5169 (6) ÅT = 295 K
β = 103.850 (6)°Prism, colourless
V = 1514.17 (17) Å30.40 × 0.30 × 0.20 mm
Z = 4
Agilent SuperNova Dual diffractometer with an Atlas detector3478 independent reflections
Radiation source: SuperNova (Mo) X-ray Source2570 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.031
Detector resolution: 10.4041 pixels mm-1θmax = 27.5°, θmin = 2.9°
ω scanh = −15→18
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −14→11
Tmin = 0.898, Tmax = 1.000l = −12→12
10191 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.111H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0432P)2 + 0.4541P] where P = (Fo2 + 2Fc2)/3
3478 reflections(Δ/σ)max = 0.001
199 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.54931 (5)0.65490 (7)0.48095 (8)0.0811 (3)
S1−0.01110 (4)1.16708 (5)−0.15948 (5)0.04527 (17)
F10.27125 (11)1.14248 (13)−0.60633 (13)0.0658 (4)
N10.20984 (11)1.00001 (15)0.08010 (15)0.0379 (4)
N20.13525 (11)1.03202 (14)−0.03592 (15)0.0368 (4)
N30.10065 (13)1.17944 (16)0.10514 (17)0.0463 (4)
H310.14831.15420.17410.056*
H320.06691.24070.12070.056*
C10.31834 (13)0.83907 (18)0.1544 (2)0.0381 (4)
C20.37595 (15)0.9020 (2)0.2678 (2)0.0498 (5)
H20.36610.98290.27720.060*
C30.44754 (16)0.8454 (2)0.3665 (2)0.0559 (6)
H30.48600.88790.44190.067*
C40.46163 (14)0.7261 (2)0.3529 (2)0.0505 (6)
C50.40755 (15)0.6624 (2)0.2408 (3)0.0533 (6)
H50.41870.58190.23140.064*
C60.33602 (14)0.7194 (2)0.1414 (2)0.0476 (5)
H60.29930.67660.06470.057*
C70.23925 (13)0.89711 (18)0.05223 (19)0.0366 (4)
C80.18302 (14)0.84371 (17)−0.08689 (19)0.0394 (4)
H8A0.14240.7802−0.06870.047*
H8B0.22420.8136−0.14520.047*
C90.12464 (13)0.95057 (17)−0.15998 (18)0.0365 (4)
H90.05810.9282−0.19660.044*
C100.16342 (12)1.00448 (17)−0.27969 (17)0.0330 (4)
C110.23938 (13)1.08168 (18)−0.24895 (19)0.0403 (5)
H110.26561.1032−0.15340.048*
C120.27723 (14)1.12774 (19)−0.3580 (2)0.0442 (5)
H120.32881.1791−0.33700.053*
C130.23618 (15)1.09503 (19)−0.4978 (2)0.0430 (5)
C140.16111 (15)1.01890 (19)−0.53370 (19)0.0463 (5)
H140.13500.9983−0.62960.056*
C150.12497 (14)0.97331 (18)−0.42252 (19)0.0400 (4)
H150.07410.9210−0.44420.048*
C160.07946 (13)1.12480 (17)−0.02300 (19)0.0352 (4)
U11U22U33U12U13U23
Cl10.0556 (4)0.0764 (5)0.0967 (5)0.0061 (3)−0.0106 (3)0.0318 (4)
S10.0410 (3)0.0485 (4)0.0446 (3)0.0047 (2)0.0067 (2)0.0045 (2)
F10.0922 (10)0.0679 (10)0.0444 (7)−0.0139 (8)0.0304 (7)0.0066 (6)
N10.0384 (8)0.0440 (10)0.0306 (7)0.0025 (7)0.0068 (6)0.0007 (7)
N20.0406 (8)0.0402 (10)0.0295 (7)0.0046 (7)0.0080 (6)−0.0024 (6)
N30.0537 (10)0.0438 (10)0.0409 (9)0.0073 (8)0.0106 (7)−0.0069 (7)
C10.0368 (10)0.0409 (12)0.0380 (9)0.0007 (8)0.0116 (7)0.0033 (8)
C20.0544 (13)0.0427 (13)0.0485 (12)0.0034 (10)0.0045 (9)−0.0004 (9)
C30.0520 (13)0.0587 (16)0.0488 (12)−0.0014 (11)−0.0041 (10)0.0004 (10)
C40.0349 (10)0.0542 (15)0.0606 (13)0.0006 (10)0.0078 (9)0.0182 (11)
C50.0412 (11)0.0397 (13)0.0768 (15)0.0024 (10)0.0094 (10)0.0066 (11)
C60.0400 (11)0.0449 (13)0.0565 (12)−0.0026 (9)0.0091 (9)−0.0029 (10)
C70.0360 (10)0.0397 (12)0.0361 (9)−0.0015 (8)0.0129 (7)0.0007 (8)
C80.0462 (11)0.0372 (11)0.0355 (9)−0.0004 (9)0.0111 (8)−0.0002 (8)
C90.0364 (9)0.0401 (11)0.0324 (9)−0.0022 (8)0.0074 (7)−0.0048 (8)
C100.0329 (9)0.0343 (10)0.0307 (8)0.0027 (8)0.0056 (7)−0.0015 (7)
C110.0412 (10)0.0458 (12)0.0313 (9)−0.0044 (9)0.0033 (7)−0.0028 (8)
C120.0431 (11)0.0462 (13)0.0437 (11)−0.0074 (9)0.0114 (8)−0.0010 (9)
C130.0575 (12)0.0397 (12)0.0354 (10)0.0030 (10)0.0181 (9)0.0038 (8)
C140.0605 (13)0.0466 (13)0.0289 (9)−0.0014 (10)0.0053 (8)−0.0020 (8)
C150.0440 (11)0.0380 (11)0.0350 (9)−0.0046 (9)0.0037 (8)−0.0030 (8)
C160.0378 (9)0.0351 (11)0.0358 (9)−0.0042 (8)0.0148 (7)0.0024 (8)
Cl1—C41.735 (2)C5—H50.9300
S1—C161.6821 (19)C6—H60.9300
F1—C131.365 (2)C7—C81.505 (2)
N1—C71.285 (2)C8—C91.540 (3)
N1—N21.397 (2)C8—H8A0.9700
N2—C161.347 (2)C8—H8B0.9700
N2—C91.474 (2)C9—C101.514 (3)
N3—C161.335 (2)C9—H90.9800
N3—H310.8800C10—C111.381 (3)
N3—H320.8800C10—C151.386 (2)
C1—C61.384 (3)C11—C121.386 (3)
C1—C21.392 (3)C11—H110.9300
C1—C71.470 (3)C12—C131.373 (3)
C2—C31.380 (3)C12—H120.9300
C2—H20.9300C13—C141.366 (3)
C3—C41.371 (3)C14—C151.388 (3)
C3—H30.9300C14—H140.9300
C4—C51.367 (3)C15—H150.9300
C5—C61.385 (3)
C7—N1—N2107.67 (15)C7—C8—H8B111.4
C16—N2—N1119.92 (15)C9—C8—H8B111.4
C16—N2—C9127.35 (15)H8A—C8—H8B109.2
N1—N2—C9112.63 (14)N2—C9—C10111.49 (15)
C16—N3—H31120.0N2—C9—C8100.63 (13)
C16—N3—H32120.0C10—C9—C8112.91 (15)
H31—N3—H32120.0N2—C9—H9110.5
C6—C1—C2118.41 (18)C10—C9—H9110.5
C6—C1—C7120.48 (18)C8—C9—H9110.5
C2—C1—C7121.10 (19)C11—C10—C15118.82 (17)
C3—C2—C1120.5 (2)C11—C10—C9121.08 (15)
C3—C2—H2119.7C15—C10—C9120.06 (17)
C1—C2—H2119.7C10—C11—C12121.19 (17)
C4—C3—C2119.7 (2)C10—C11—H11119.4
C4—C3—H3120.2C12—C11—H11119.4
C2—C3—H3120.2C13—C12—C11117.83 (19)
C3—C4—C5121.16 (19)C13—C12—H12121.1
C3—C4—Cl1119.23 (17)C11—C12—H12121.1
C5—C4—Cl1119.61 (19)C14—C13—F1118.55 (17)
C4—C5—C6119.1 (2)C14—C13—C12123.16 (18)
C4—C5—H5120.4F1—C13—C12118.28 (19)
C6—C5—H5120.4C13—C14—C15117.89 (17)
C5—C6—C1121.1 (2)C13—C14—H14121.1
C5—C6—H6119.5C15—C14—H14121.1
C1—C6—H6119.5C10—C15—C14121.10 (18)
N1—C7—C1120.74 (17)C10—C15—H15119.4
N1—C7—C8113.88 (16)C14—C15—H15119.4
C1—C7—C8125.33 (18)N3—C16—N2115.42 (16)
C7—C8—C9102.08 (15)N3—C16—S1122.79 (16)
C7—C8—H8A111.4N2—C16—S1121.78 (14)
C9—C8—H8A111.4
C7—N1—N2—C16167.15 (16)C16—N2—C9—C8−159.69 (18)
C7—N1—N2—C9−9.4 (2)N1—N2—C9—C816.59 (19)
C6—C1—C2—C3−1.4 (3)C7—C8—C9—N2−16.22 (18)
C7—C1—C2—C3177.32 (19)C7—C8—C9—C10102.72 (17)
C1—C2—C3—C4−0.3 (3)N2—C9—C10—C1131.9 (2)
C2—C3—C4—C51.8 (4)C8—C9—C10—C11−80.5 (2)
C2—C3—C4—Cl1−177.91 (17)N2—C9—C10—C15−150.42 (17)
C3—C4—C5—C6−1.4 (4)C8—C9—C10—C1597.1 (2)
Cl1—C4—C5—C6178.23 (17)C15—C10—C11—C12−0.1 (3)
C4—C5—C6—C1−0.3 (3)C9—C10—C11—C12177.60 (18)
C2—C1—C6—C51.7 (3)C10—C11—C12—C130.6 (3)
C7—C1—C6—C5−177.00 (19)C11—C12—C13—C14−0.7 (3)
N2—N1—C7—C1179.67 (16)C11—C12—C13—F1178.21 (18)
N2—N1—C7—C8−2.9 (2)F1—C13—C14—C15−178.68 (19)
C6—C1—C7—N1165.27 (18)C12—C13—C14—C150.2 (3)
C2—C1—C7—N1−13.4 (3)C11—C10—C15—C14−0.4 (3)
C6—C1—C7—C8−11.9 (3)C9—C10—C15—C14−178.12 (18)
C2—C1—C7—C8169.41 (19)C13—C14—C15—C100.3 (3)
N1—C7—C8—C912.9 (2)N1—N2—C16—N3−0.7 (2)
C1—C7—C8—C9−169.76 (17)C9—N2—C16—N3175.38 (17)
C16—N2—C9—C1080.3 (2)N1—N2—C16—S1179.89 (13)
N1—N2—C9—C10−103.38 (17)C9—N2—C16—S1−4.1 (3)
D—H···AD—HH···AD···AD—H···A
N3—H31···N10.882.242.617 (2)106
N3—H31···F1i0.882.413.257 (2)163
N3—H32···S1ii0.882.813.5203 (19)139
C4—Cl1···Cg1iii1.74 (1)3.92 (1)4.183 (2)86 (1)
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C1–C6 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H31⋯N10.882.242.617 (2)106
N3—H31⋯F1i 0.882.413.257 (2)163
N3—H32⋯S1ii 0.882.813.5203 (19)139
C4—Cl1⋯Cg1iii 1.735 (2)3.9240 (12)4.183 (2)86.17 (17)

Symmetry codes: (i) ; (ii) ; (iii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Design and synthesis of new 4-pyrazolin-3-yl-1,2,3-triazoles and 1,2,3-triazol-4-yl-pyrazolin-1-ylthiazoles as potential antimicrobial agents.

Authors:  Bakr F Abdel-Wahab; Ehab Abdel-Latif; Hanan A Mohamed; Ghada E A Awad
Journal:  Eur J Med Chem       Date:  2012-03-23       Impact factor: 6.514

3.  Synthesis and antimicrobial evaluation of 1-(benzofuran-2-yl)-4-nitro-3-arylbutan-1-ones and 3-(benzofuran-2-yl)-4,5-dihydro-5-aryl-1-[4-(aryl)-1,3-thiazol-2-yl]-1H-pyrazoles.

Authors:  Bakr F Abdel-Wahab; Hatem A Abdel-Aziz; Essam M Ahmed
Journal:  Eur J Med Chem       Date:  2008-10-02       Impact factor: 6.514

4.  Synthesis and inhibitory activity against human monoamine oxidase of N1-thiocarbamoyl-3,5-di(hetero)aryl-4,5-dihydro-(1H)-pyrazole derivatives.

Authors:  Franco Chimenti; Simone Carradori; Daniela Secci; Adriana Bolasco; Bruna Bizzarri; Paola Chimenti; Arianna Granese; Matilde Yáñez; Francisco Orallo
Journal:  Eur J Med Chem       Date:  2009-11-06       Impact factor: 6.514

5.  5-(4-Eth-oxy-phen-yl)-3-(pyridin-2-yl)-4,5-dihydro-1H-pyrazole-1-carbothio-amide.

Authors:  Suchada Chantrapromma; Phonpawee Nonthason; Thitipone Suwunwong; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-24

6.  5-(4-Fluoro-phen-yl)-3-(4-methyl-phen-yl)-4,5-dihydro-1H-pyrazole-1-carbothio-amide.

Authors:  Bakr F Abdel-Wahab; Hanan A Mohamed; Rizk E Khidre; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-02-16
  6 in total

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