Literature DB >> 23476505

(Butane-1,2,3,4-tetraol-κ(3) O (1),O (2),O (3))(ethanol-κO)tris-(nitrato-κ(2) O,O')holmium(III).

Xiao-Hui Hua1, Jun-Hui Xue, Li-Min Yang, Yi-Zhuang Xu, Jin-Guang Wu.   

Abstract

In the title Ho(III)-erythritol complex, [Ho(NO3)3(C4H10O4)(C2H5OH)], the Ho(III) cation is chelated by a tridentate erythritol ligand and three bidentate nitrate anions. An ethanol mol-ecule further coordinates the Ho(III) cation, completing the irregular O10 coordination geometry. In the crystal, an extensive O-H⋯O hydrogen-bond network links the mol-ecules into a three-dimensional supra-molecular structure.

Entities:  

Year:  2013        PMID: 23476505      PMCID: PMC3588509          DOI: 10.1107/S160053681300305X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For crystal structures of related lanthanide nitrateerythritol complexes, see: Gyurcsik & Nagy (2000 ▶); Yang et al. (2003 ▶, 2004 ▶, 2012 ▶).

Experimental

Crystal data

[Ho(NO3)3(C4H10O4)(C2H6O)] M = 519.15 Monoclinic, a = 7.7501 (16) Å b = 12.783 (3) Å c = 15.164 (3) Å β = 100.35 (3)° V = 1477.8 (5) Å3 Z = 4 Mo Kα radiation μ = 5.44 mm−1 T = 173 K 0.26 × 0.19 × 0.19 mm

Data collection

Rigaku Saturn724+ CCD diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2007 ▶) T min = 0.25, T max = 0.36 10146 measured reflections 3376 independent reflections 3198 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.061 S = 1.19 3376 reflections 218 parameters H-atom parameters constrained Δρmax = 1.11 e Å−3 Δρmin = −0.83 e Å−3 Data collection: CrystalClear (Rigaku, 2007 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681300305X/xu5656sup1.cif Click here for additional data file. Supplementary material file. DOI: 10.1107/S160053681300305X/xu5656Isup2.cdx Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681300305X/xu5656Isup3.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ho(NO3)3(C4H10O4)(C2H6O)]F(000) = 1008
Mr = 519.15Dx = 2.333 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5233 reflections
a = 7.7501 (16) Åθ = 2.1–27.5°
b = 12.783 (3) ŵ = 5.44 mm1
c = 15.164 (3) ÅT = 173 K
β = 100.35 (3)°Block, colorless
V = 1477.8 (5) Å30.26 × 0.19 × 0.19 mm
Z = 4
Rigaku Saturn724+ CCD diffractometer3376 independent reflections
Radiation source: fine-focus sealed tube3198 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.038
Detector resolution: 28.5714 pixels mm-1θmax = 27.5°, θmin = 2.1°
ω scans at fixed χ = 45°h = −10→9
Absorption correction: multi-scan (CrystalClear; Rigaku, 2007)k = −14→16
Tmin = 0.25, Tmax = 0.36l = −19→19
10146 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.061H-atom parameters constrained
S = 1.19w = 1/[σ2(Fo2) + (0.0123P)2 + 3.0745P] where P = (Fo2 + 2Fc2)/3
3376 reflections(Δ/σ)max = 0.001
218 parametersΔρmax = 1.11 e Å3
0 restraintsΔρmin = −0.83 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ho10.87485 (2)0.104079 (12)0.252907 (11)0.01270 (6)
O10.8663 (3)0.1741 (2)0.10772 (18)0.0164 (6)
H10.80360.14100.06600.025*
O21.1423 (3)0.1887 (2)0.24123 (17)0.0148 (6)
H21.14060.25090.25890.022*
O31.0696 (3)0.00635 (19)0.16970 (17)0.0150 (5)
H31.0969−0.05510.18610.023*
O41.2729 (4)−0.0786 (2)0.04468 (19)0.0211 (6)
H41.3661−0.08460.08230.025*
O50.6941 (4)0.0507 (2)0.3547 (2)0.0226 (6)
H50.73170.00520.39330.027*
O61.0213 (4)0.1747 (2)0.39669 (19)0.0231 (6)
O71.0682 (4)0.0119 (2)0.3731 (2)0.0229 (6)
O81.2006 (4)0.0879 (3)0.4970 (2)0.0307 (7)
O90.6021 (4)0.2037 (2)0.2129 (2)0.0213 (6)
O100.8267 (4)0.2959 (2)0.2684 (2)0.0209 (6)
O110.5809 (4)0.3735 (2)0.2135 (2)0.0281 (7)
O120.8170 (4)−0.0952 (2)0.23689 (19)0.0178 (6)
O130.6491 (4)0.0108 (2)0.14891 (19)0.0185 (6)
O140.6096 (4)−0.1565 (2)0.1343 (2)0.0279 (7)
N11.0997 (5)0.0912 (3)0.4249 (2)0.0200 (7)
N20.6662 (4)0.2943 (3)0.2309 (2)0.0178 (7)
N30.6893 (4)−0.0825 (3)0.1723 (2)0.0175 (7)
C11.0234 (5)0.2218 (3)0.0869 (3)0.0178 (8)
H1A1.01800.29870.09340.021*
H1B1.03500.20550.02440.021*
C21.1784 (5)0.1781 (3)0.1517 (3)0.0157 (8)
H2A1.28610.21900.14640.019*
C31.2153 (5)0.0621 (3)0.1435 (3)0.0144 (7)
H3A1.32450.04440.18690.017*
C41.2410 (5)0.0312 (3)0.0504 (3)0.0183 (8)
H4A1.13500.05010.00650.022*
H4B1.34150.07040.03480.022*
C50.5492 (6)0.0933 (3)0.3922 (3)0.0270 (10)
H5A0.47760.03510.40920.032*
H5B0.47350.13560.34600.032*
C60.6115 (6)0.1606 (3)0.4734 (3)0.0287 (10)
H6A0.68320.11840.52020.043*
H6B0.51000.18840.49610.043*
H6C0.68170.21870.45680.043*
U11U22U33U12U13U23
Ho10.01219 (10)0.01246 (10)0.01306 (10)0.00054 (6)0.00127 (7)0.00034 (6)
O10.0137 (14)0.0171 (14)0.0166 (14)−0.0037 (11)−0.0024 (11)0.0009 (10)
O20.0186 (14)0.0102 (13)0.0160 (14)−0.0010 (11)0.0043 (11)−0.0037 (10)
O30.0164 (14)0.0118 (13)0.0178 (14)−0.0010 (11)0.0055 (11)0.0020 (10)
O40.0194 (15)0.0230 (15)0.0199 (15)0.0016 (12)0.0005 (12)−0.0056 (11)
O50.0223 (15)0.0237 (16)0.0232 (16)0.0044 (12)0.0080 (13)0.0064 (12)
O60.0278 (17)0.0220 (16)0.0179 (15)0.0052 (13)−0.0001 (13)−0.0004 (11)
O70.0230 (15)0.0203 (15)0.0243 (16)0.0022 (12)0.0017 (13)0.0010 (12)
O80.0273 (18)0.0436 (19)0.0188 (16)0.0073 (15)−0.0024 (14)0.0043 (13)
O90.0172 (14)0.0150 (14)0.0311 (17)−0.0017 (12)0.0026 (12)0.0001 (12)
O100.0141 (14)0.0198 (15)0.0270 (16)0.0023 (12)−0.0013 (12)−0.0045 (11)
O110.0257 (17)0.0181 (15)0.040 (2)0.0102 (13)0.0039 (15)0.0035 (13)
O120.0122 (13)0.0180 (14)0.0219 (15)0.0005 (11)−0.0002 (12)0.0033 (11)
O130.0169 (14)0.0125 (13)0.0243 (15)0.0012 (11)−0.0008 (12)0.0017 (11)
O140.0308 (18)0.0150 (15)0.0356 (19)−0.0063 (13)−0.0003 (14)−0.0042 (12)
N10.0182 (18)0.0266 (19)0.0147 (17)0.0032 (15)0.0019 (14)0.0017 (14)
N20.0175 (17)0.0168 (18)0.0198 (17)0.0038 (14)0.0053 (14)0.0012 (13)
N30.0160 (17)0.0163 (17)0.0201 (18)0.0003 (14)0.0033 (14)−0.0019 (13)
C10.0162 (19)0.018 (2)0.020 (2)−0.0032 (16)0.0041 (16)0.0033 (15)
C20.0152 (19)0.0173 (19)0.0153 (19)−0.0023 (15)0.0044 (15)−0.0015 (14)
C30.0121 (18)0.0134 (18)0.0172 (19)−0.0006 (15)0.0010 (15)−0.0001 (14)
C40.019 (2)0.019 (2)0.018 (2)0.0010 (16)0.0051 (16)0.0007 (15)
C50.025 (2)0.029 (2)0.029 (2)−0.0022 (19)0.007 (2)−0.0033 (18)
C60.033 (3)0.024 (2)0.028 (2)0.0014 (19)0.002 (2)−0.0043 (18)
Ho1—O12.367 (3)O8—N11.225 (4)
Ho1—O22.373 (3)O9—N21.271 (4)
Ho1—O32.473 (3)O10—N21.272 (4)
Ho1—O52.364 (3)O11—N21.212 (4)
Ho1—O62.443 (3)O12—N31.272 (4)
Ho1—O72.444 (3)O13—N31.267 (4)
Ho1—O92.449 (3)O14—N31.217 (4)
Ho1—O102.497 (3)C1—C21.515 (5)
Ho1—O122.590 (3)C1—H1A0.9900
Ho1—O132.445 (3)C1—H1B0.9900
O1—C11.446 (4)C2—C31.520 (5)
O1—H10.8399C2—H2A1.0000
O2—C21.441 (4)C3—C41.514 (5)
O2—H20.8400C3—H3A1.0000
O3—C31.450 (4)C4—H4A0.9900
O3—H30.8400C4—H4B0.9900
O4—C41.430 (5)C5—C61.509 (6)
O4—H40.8401C5—H5A0.9900
O5—C51.453 (5)C5—H5B0.9900
O5—H50.8400C6—H6A0.9800
O6—N11.265 (4)C6—H6B0.9800
O7—N11.279 (4)C6—H6C0.9800
O5—Ho1—O1142.74 (10)C5—O5—Ho1137.5 (2)
O5—Ho1—O2143.95 (10)C5—O5—H5100.5
O1—Ho1—O268.71 (9)Ho1—O5—H5118.9
O5—Ho1—O676.03 (10)N1—O6—Ho196.2 (2)
O1—Ho1—O6128.42 (9)N1—O7—Ho195.8 (2)
O2—Ho1—O668.05 (10)N2—O9—Ho197.7 (2)
O5—Ho1—O774.33 (10)N2—O10—Ho195.3 (2)
O1—Ho1—O7141.90 (10)N3—O12—Ho192.5 (2)
O2—Ho1—O781.29 (9)N3—O13—Ho199.6 (2)
O6—Ho1—O752.28 (10)O8—N1—O6121.5 (3)
O5—Ho1—O1380.85 (10)O8—N1—O7122.8 (3)
O1—Ho1—O1371.78 (9)O6—N1—O7115.7 (3)
O2—Ho1—O13135.05 (9)O11—N2—O9122.5 (3)
O6—Ho1—O13156.88 (10)O11—N2—O10122.4 (3)
O7—Ho1—O13121.18 (9)O9—N2—O10115.1 (3)
O5—Ho1—O974.06 (10)O14—N3—O13121.4 (3)
O1—Ho1—O972.19 (10)O14—N3—O12121.6 (3)
O2—Ho1—O9118.12 (9)O13—N3—O12117.0 (3)
O6—Ho1—O9105.73 (10)O1—C1—C2107.7 (3)
O7—Ho1—O9145.26 (10)O1—C1—H1A110.2
O13—Ho1—O966.90 (9)C2—C1—H1A110.2
O5—Ho1—O3132.46 (9)O1—C1—H1B110.2
O1—Ho1—O368.54 (9)C2—C1—H1B110.2
O2—Ho1—O364.58 (9)H1A—C1—H1B108.5
O6—Ho1—O3114.44 (9)O2—C2—C1108.1 (3)
O7—Ho1—O377.77 (9)O2—C2—C3103.8 (3)
O13—Ho1—O381.74 (9)C1—C2—C3116.5 (3)
O9—Ho1—O3135.65 (10)O2—C2—H2A109.4
O5—Ho1—O1096.08 (10)C1—C2—H2A109.4
O1—Ho1—O1074.71 (9)C3—C2—H2A109.4
O2—Ho1—O1072.95 (9)O3—C3—C4111.5 (3)
O6—Ho1—O1066.84 (9)O3—C3—C2106.9 (3)
O7—Ho1—O10119.02 (9)C4—C3—C2112.9 (3)
O13—Ho1—O10115.95 (9)O3—C3—H3A108.5
O9—Ho1—O1051.40 (9)C4—C3—H3A108.5
O3—Ho1—O10131.23 (9)C2—C3—H3A108.5
O5—Ho1—O1270.39 (9)O4—C4—C3111.4 (3)
O1—Ho1—O12108.02 (9)O4—C4—H4A109.3
O2—Ho1—O12125.46 (9)C3—C4—H4A109.3
O6—Ho1—O12119.47 (9)O4—C4—H4B109.3
O7—Ho1—O1270.65 (9)C3—C4—H4B109.3
O13—Ho1—O1250.82 (9)H4A—C4—H4B108.0
O9—Ho1—O12111.14 (9)O5—C5—C6112.1 (4)
O3—Ho1—O1264.32 (9)O5—C5—H5A109.2
O10—Ho1—O12161.43 (9)C6—C5—H5A109.2
C1—O1—Ho1118.6 (2)O5—C5—H5B109.2
C1—O1—H1116.3C6—C5—H5B109.2
Ho1—O1—H1115.3H5A—C5—H5B107.9
C2—O2—Ho1110.3 (2)C5—C6—H6A109.5
C2—O2—H2114.0C5—C6—H6B109.5
Ho1—O2—H2110.1H6A—C6—H6B109.5
C3—O3—Ho1117.9 (2)C5—C6—H6C109.5
C3—O3—H3112.0H6A—C6—H6C109.5
Ho1—O3—H3117.8H6B—C6—H6C109.5
C4—O4—H4100.7
D—H···AD—HH···AD···AD—H···A
O1—H1···O4i0.841.862.665 (4)161
O2—H2···O12ii0.841.992.794 (4)159
O3—H3···O10iii0.842.082.914 (4)177
O4—H4···O14iv0.842.122.894 (4)153
O5—H5···O8v0.842.032.863 (4)169
Table 1

Selected bond lengths (Å)

Ho1—O12.367 (3)
Ho1—O22.373 (3)
Ho1—O32.473 (3)
Ho1—O52.364 (3)
Ho1—O62.443 (3)
Ho1—O72.444 (3)
Ho1—O92.449 (3)
Ho1—O102.497 (3)
Ho1—O122.590 (3)
Ho1—O132.445 (3)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯O4i 0.841.862.665 (4)161
O2—H2⋯O12ii 0.841.992.794 (4)159
O3—H3⋯O10iii 0.842.082.914 (4)177
O4—H4⋯O14iv 0.842.122.894 (4)153
O5—H5⋯O8v 0.842.032.863 (4)169

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  4 in total

1.  Interactions between metal ions and carbohydrates. Spectroscopic characterization and the topology coordination behavior of erythritol with trivalent lanthanide ions.

Authors:  Limin Yang; Xiaohui Hua; Junhui Xue; Qinghua Pan; Lei Yu; Weihong Li; Yizhuang Xu; Guozhong Zhao; Liming Liu; Kexin Liu; Jia'er Chen; Jinguang Wu
Journal:  Inorg Chem       Date:  2011-12-08       Impact factor: 5.165

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Interactions between metal ions and carbohydrates. Coordination behavior of neutral erythritol to Ca(II) and lanthanide ions.

Authors:  Limin Yang; Yunlan Su; Yizhuang Xu; Zheming Wang; Zonghui Guo; Shifu Weng; Chunhua Yan; Shiwei Zhang; Jinguang Wu
Journal:  Inorg Chem       Date:  2003-09-22       Impact factor: 5.165

4.  Interactions between metal ions and carbohydrates: the coordination behavior of neutral erythritol to zinc and europium nitrate.

Authors:  Limin Yang; Yunlan Su; Yizhuang Xu; Shiwei Zhang; Jinguang Wu; Kui Zhao
Journal:  J Inorg Biochem       Date:  2004-08       Impact factor: 4.155

  4 in total
  2 in total

1.  (Butane-1,2,3,4-tetraol-κ(3) O (1),O (2),O (3))(ethanol-κO)tris-(nitrato-κ(2) O,O')erbium(III).

Authors:  Xiao-Hui Hua; Jun-Hui Xue; Li-Min Yang; Yi-Zhuang Xu; Jin-Guang Wu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-13

2.  [(2R,3S)-Butane-1,2,3,4-tetraol-κ(3) O (1),O (2),O (3)](ethanol-κO)tris-(nitrato-κ(2) O,O')samarium(III).

Authors:  Jun-Hui Xue; Xiao-Hui Hua; Li-Min Yang; Yi-Zhuang Xu; Jin-Guang Wu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-03-02
  2 in total

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