Literature DB >> 23633987

[(2R,3S)-Butane-1,2,3,4-tetraol-κ(3) O (1),O (2),O (3)](ethanol-κO)tris-(nitrato-κ(2) O,O')samarium(III).

Jun-Hui Xue1, Xiao-Hui Hua, Li-Min Yang, Yi-Zhuang Xu, Jin-Guang Wu.   

Abstract

The title Sm(III)-erythritol complex, [Sm(NO3)3(C2H6O)(C4H10O4)], is isotypic with its Nd, Eu, Y, Gd, Tb and Ho analogues. The Sm(III) cation exhibits a coordination number of ten and is chelated by a tridentate erythritol ligand and three bidentate nitrate anions. It is additionally coordinated by an O atom of an ethanol mol-ecule, completing an irregular coordination sphere. The Sm-O bond lengths range from 2.416 (2) to 2.611 (2) Å. In the crystal, extensive O-H⋯O hydrogen bonding involving all hy-droxy groups and some of the nitrate O atoms links the mol-ecules into a three-dimensional network.

Entities:  

Year:  2013        PMID: 23633987      PMCID: PMC3629469          DOI: 10.1107/S1600536813003255

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the coordination behaviour of sugars to metal cations, see: Gottschaldt & Schubert (2009 ▶). For the crystal structure of free erythritol, see: Bekoe & Powell (1959 ▶). For isotypic structures of the title compound, see: Yang et al. (2003 ▶, 2004 ▶, 2012 ▶); Hua et al. (2013 ▶).

Experimental

Crystal data

[Sm(NO3)3(C2H6O)(C4H10O4)] M = 504.57 Monoclinic, a = 7.8537 (16) Å b = 12.875 (3) Å c = 15.252 (3) Å β = 100.92 (3)° V = 1514.4 (5) Å3 Z = 4 Mo Kα radiation μ = 3.96 mm−1 T = 173 K 0.27 × 0.21 × 0.16 mm

Data collection

Rigaku Saturn724+ CCD diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2007 ▶) T min = 0.488, T max = 1.000 10349 measured reflections 3446 independent reflections 3315 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.057 S = 1.22 3446 reflections 218 parameters Δρmax = 1.33 e Å−3 Δρmin = −0.72 e Å−3 Data collection: CrystalClear (Rigaku, 2007 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: XP in SHELXTL; software used to prepare material for publication: SHELXTL. Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813003255/wm2711sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813003255/wm2711Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813003255/wm2711Isup3.cdx Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Sm(NO3)3(C2H6O)(C4H10O4)]F(000) = 988
Mr = 504.57Dx = 2.213 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5882 reflections
a = 7.8537 (16) Åθ = 1.4–27.5°
b = 12.875 (3) ŵ = 3.96 mm1
c = 15.252 (3) ÅT = 173 K
β = 100.92 (3)°Block, colorless
V = 1514.4 (5) Å30.27 × 0.21 × 0.16 mm
Z = 4
Rigaku Saturn724+ CCD diffractometer3446 independent reflections
Radiation source: fine-focus sealed tube3315 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.035
Detector resolution: 28.5714 pixels mm-1θmax = 27.5°, θmin = 2.1°
ω scans fixed at = 45°h = −10→10
Absorption correction: multi-scan (CrystalClear; Rigaku, 2007)k = −16→15
Tmin = 0.488, Tmax = 1.000l = −19→19
10349 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.057H-atom parameters constrained
S = 1.22w = 1/[σ2(Fo2) + (0.010P)2 + 2.6923P] where P = (Fo2 + 2Fc2)/3
3446 reflections(Δ/σ)max = 0.001
218 parametersΔρmax = 1.33 e Å3
0 restraintsΔρmin = −0.72 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Sm10.12473 (2)0.103866 (13)0.245568 (11)0.01311 (6)
O2−0.1453 (3)0.19005 (18)0.26026 (15)0.0152 (5)
H2−0.16270.25360.24970.018*
O70.1854 (3)−0.09504 (18)0.26433 (17)0.0191 (5)
O120.1760 (3)0.2978 (2)0.23049 (18)0.0226 (6)
O9−0.0707 (3)0.0131 (2)0.11892 (18)0.0237 (6)
O3−0.0744 (3)0.00648 (18)0.32999 (16)0.0172 (5)
H3−0.1087−0.05390.31520.021*
O10.1328 (3)0.17252 (18)0.39375 (16)0.0171 (5)
H10.17530.13870.43980.021*
O10−0.0309 (3)0.1772 (2)0.10178 (17)0.0219 (5)
O140.4196 (3)0.3751 (2)0.2861 (2)0.0298 (6)
O11−0.2048 (3)0.0930 (2)−0.00145 (18)0.0284 (6)
O60.3562 (3)0.00887 (19)0.35122 (17)0.0202 (5)
O4−0.2725 (3)−0.0768 (2)0.45451 (17)0.0217 (5)
H4−0.3741−0.08860.42740.026*
N10.3140 (4)−0.0835 (2)0.3280 (2)0.0187 (6)
N2−0.1050 (4)0.0942 (2)0.0709 (2)0.0209 (7)
O130.3997 (3)0.20661 (19)0.28786 (18)0.0233 (6)
O80.3934 (4)−0.1577 (2)0.36532 (19)0.0288 (6)
O50.3062 (3)0.0520 (2)0.14084 (17)0.0225 (6)
H50.26540.00500.10470.027*
N30.3355 (4)0.2958 (2)0.2693 (2)0.0180 (6)
C50.4524 (4)0.0950 (3)0.1065 (3)0.0218 (8)
H5A0.52480.03780.09040.026*
H5B0.52500.13740.15350.026*
C3−0.2160 (4)0.0631 (3)0.3569 (2)0.0155 (7)
H3A−0.32520.04670.31370.019*
C4−0.2402 (4)0.0320 (3)0.4494 (2)0.0195 (7)
H4A−0.13480.05040.49330.023*
H4B−0.33880.07120.46500.023*
C2−0.1785 (4)0.1780 (3)0.3500 (2)0.0166 (7)
H2A−0.28360.21900.35620.020*
C1−0.0225 (4)0.2200 (3)0.4137 (2)0.0191 (7)
H1A−0.01640.29640.40720.023*
H1B−0.03280.20420.47600.023*
C60.3896 (5)0.1610 (3)0.0262 (3)0.0275 (9)
H6A0.32230.1182−0.02120.041*
H6B0.48920.19120.00520.041*
H6C0.31620.21680.04210.041*
U11U22U33U12U13U23
Sm10.01387 (8)0.01135 (10)0.01389 (10)−0.00053 (6)0.00207 (6)−0.00031 (7)
O20.0215 (12)0.0087 (12)0.0153 (12)0.0035 (9)0.0037 (9)0.0039 (10)
O70.0174 (11)0.0155 (13)0.0231 (14)−0.0022 (9)0.0010 (10)−0.0016 (11)
O120.0181 (12)0.0197 (14)0.0275 (14)−0.0009 (10)−0.0017 (10)0.0055 (11)
O90.0284 (13)0.0166 (13)0.0248 (14)−0.0026 (10)0.0019 (11)0.0012 (12)
O30.0183 (11)0.0105 (12)0.0238 (13)−0.0014 (9)0.0068 (9)−0.0022 (10)
O10.0166 (11)0.0180 (13)0.0160 (12)0.0031 (9)0.0012 (9)−0.0009 (10)
O100.0270 (13)0.0205 (14)0.0164 (13)−0.0053 (10)−0.0001 (10)0.0012 (11)
O140.0291 (15)0.0187 (14)0.0410 (18)−0.0112 (11)0.0052 (12)−0.0063 (13)
O110.0265 (14)0.0382 (17)0.0175 (14)−0.0043 (12)−0.0032 (10)−0.0024 (13)
O60.0203 (12)0.0134 (13)0.0251 (14)−0.0014 (9)−0.0003 (10)−0.0033 (11)
O40.0221 (12)0.0227 (14)0.0191 (13)−0.0042 (10)0.0007 (10)0.0073 (11)
N10.0196 (14)0.0170 (16)0.0195 (16)0.0000 (11)0.0033 (11)−0.0010 (13)
N20.0178 (14)0.0254 (18)0.0192 (16)−0.0023 (12)0.0026 (11)−0.0017 (14)
O130.0179 (12)0.0166 (13)0.0341 (15)−0.0003 (10)0.0016 (10)0.0005 (12)
O80.0349 (15)0.0151 (14)0.0336 (16)0.0075 (11)−0.0005 (12)0.0065 (12)
O50.0235 (13)0.0224 (14)0.0238 (14)−0.0037 (10)0.0102 (10)−0.0061 (12)
N30.0186 (14)0.0140 (15)0.0216 (16)−0.0031 (11)0.0045 (11)0.0005 (13)
C50.0175 (16)0.024 (2)0.026 (2)0.0004 (14)0.0094 (14)0.0040 (17)
C30.0139 (15)0.0161 (18)0.0167 (17)0.0029 (12)0.0033 (12)0.0012 (14)
C40.0222 (17)0.0183 (19)0.0178 (18)−0.0003 (14)0.0036 (13)0.0040 (15)
C20.0175 (15)0.0160 (18)0.0176 (18)0.0031 (13)0.0066 (13)0.0007 (15)
C10.0207 (17)0.0159 (18)0.0215 (19)0.0023 (13)0.0062 (14)−0.0031 (15)
C60.035 (2)0.023 (2)0.023 (2)−0.0038 (16)0.0037 (16)0.0020 (17)
Sm1—O12.416 (2)O6—N11.267 (4)
Sm1—O52.427 (3)O4—C41.429 (4)
Sm1—O22.441 (2)O4—H40.8400
Sm1—O102.486 (3)N1—O81.221 (4)
Sm1—O62.507 (2)O13—N31.265 (4)
Sm1—O132.511 (2)O5—C51.459 (4)
Sm1—O92.516 (3)O5—H50.8400
Sm1—O32.537 (2)C5—C61.496 (5)
Sm1—O122.547 (3)C5—H5A0.9900
Sm1—O72.611 (2)C5—H5B0.9900
O2—C21.448 (4)C3—C41.512 (5)
O2—H20.8400C3—C21.516 (5)
O7—N11.270 (4)C3—H3A1.0000
O12—N31.280 (4)C4—H4A0.9900
O9—N21.275 (4)C4—H4B0.9900
O3—C31.453 (4)C2—C11.512 (5)
O3—H30.8400C2—H2A1.0000
O1—C11.448 (4)C1—H1A0.9900
O1—H10.8400C1—H1B0.9900
O10—N21.265 (4)C6—H6A0.9800
O14—N31.216 (4)C6—H6B0.9800
O11—N21.227 (4)C6—H6C0.9800
O1—Sm1—O5143.28 (8)C1—O1—H1105.1
O1—Sm1—O267.50 (8)Sm1—O1—H1121.9
O5—Sm1—O2144.50 (8)N2—O10—Sm197.0 (2)
O1—Sm1—O10127.41 (8)N1—O6—Sm199.15 (18)
O5—Sm1—O1077.06 (9)C4—O4—H4108.2
O2—Sm1—O1067.52 (8)O8—N1—O6121.3 (3)
O1—Sm1—O671.93 (8)O8—N1—O7121.8 (3)
O5—Sm1—O681.04 (9)O6—N1—O7116.8 (3)
O2—Sm1—O6134.38 (8)O11—N2—O10121.1 (3)
O10—Sm1—O6158.09 (9)O11—N2—O9122.4 (3)
O1—Sm1—O1372.42 (9)O10—N2—O9116.5 (3)
O5—Sm1—O1374.36 (9)N3—O13—Sm197.69 (18)
O2—Sm1—O13117.19 (8)C5—O5—Sm1137.0 (2)
O10—Sm1—O13106.37 (9)C5—O5—H5105.5
O6—Sm1—O1366.94 (8)Sm1—O5—H5115.6
O1—Sm1—O9142.39 (8)O14—N3—O13122.5 (3)
O5—Sm1—O973.49 (9)O14—N3—O12121.7 (3)
O2—Sm1—O982.37 (8)O13—N3—O12115.8 (3)
O10—Sm1—O951.15 (8)O5—C5—C6110.4 (3)
O6—Sm1—O9121.97 (8)O5—C5—H5A109.6
O13—Sm1—O9144.30 (9)C6—C5—H5A109.6
O1—Sm1—O367.40 (8)O5—C5—H5B109.6
O5—Sm1—O3133.87 (8)C6—C5—H5B109.6
O2—Sm1—O363.15 (8)H5A—C5—H5B108.1
O10—Sm1—O3112.83 (8)O3—C3—C4111.6 (3)
O6—Sm1—O382.77 (8)O3—C3—C2107.5 (3)
O13—Sm1—O3135.47 (8)C4—C3—C2112.6 (3)
O9—Sm1—O379.34 (8)O3—C3—H3A108.3
O1—Sm1—O1275.47 (8)C4—C3—H3A108.3
O5—Sm1—O1295.05 (9)C2—C3—H3A108.3
O2—Sm1—O1273.59 (8)O4—C4—C3111.5 (3)
O10—Sm1—O1266.89 (8)O4—C4—H4A109.3
O6—Sm1—O12115.38 (8)C3—C4—H4A109.3
O13—Sm1—O1250.47 (8)O4—C4—H4B109.3
O9—Sm1—O12118.03 (8)C3—C4—H4B109.3
O3—Sm1—O12130.81 (8)H4A—C4—H4B108.0
O1—Sm1—O7106.52 (8)O2—C2—C1107.5 (3)
O5—Sm1—O771.60 (8)O2—C2—C3104.0 (3)
O2—Sm1—O7125.41 (8)C1—C2—C3116.7 (3)
O10—Sm1—O7121.23 (8)O2—C2—H2A109.5
O6—Sm1—O749.91 (8)C1—C2—H2A109.5
O13—Sm1—O7111.01 (8)C3—C2—H2A109.5
O9—Sm1—O772.58 (8)O1—C1—C2109.1 (3)
O3—Sm1—O764.96 (8)O1—C1—H1A109.9
O12—Sm1—O7160.58 (8)C2—C1—H1A109.9
C2—O2—Sm1110.65 (18)O1—C1—H1B109.9
C2—O2—H2103.5C2—C1—H1B109.9
Sm1—O2—H2122.5H1A—C1—H1B108.3
N1—O7—Sm194.10 (18)C5—C6—H6A109.5
N3—O12—Sm195.50 (19)C5—C6—H6B109.5
N2—O9—Sm195.30 (19)H6A—C6—H6B109.5
C3—O3—Sm1118.28 (18)C5—C6—H6C109.5
C3—O3—H3108.5H6A—C6—H6C109.5
Sm1—O3—H3121.2H6B—C6—H6C109.5
C1—O1—Sm1118.48 (19)
D—H···AD—HH···AD···AD—H···A
O1—H1···O4i0.841.832.668 (3)175
O2—H2···O7ii0.841.962.802 (3)174
O2—H2···O8ii0.842.543.146 (4)130
O3—H3···O12iii0.842.072.903 (3)174
O4—H4···O8iv0.842.092.910 (4)165
O4—H4···O6iv0.842.553.235 (3)140
O5—H5···O11v0.842.002.827 (4)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯O4i 0.841.832.668 (3)175
O2—H2⋯O7ii 0.841.962.802 (3)174
O2—H2⋯O8ii 0.842.543.146 (4)130
O3—H3⋯O12iii 0.842.072.903 (3)174
O4—H4⋯O8iv 0.842.092.910 (4)165
O4—H4⋯O6iv 0.842.553.235 (3)140
O5—H5⋯O11v 0.842.002.827 (4)167

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  6 in total

1.  Interactions between metal ions and carbohydrates. Spectroscopic characterization and the topology coordination behavior of erythritol with trivalent lanthanide ions.

Authors:  Limin Yang; Xiaohui Hua; Junhui Xue; Qinghua Pan; Lei Yu; Weihong Li; Yizhuang Xu; Guozhong Zhao; Liming Liu; Kexin Liu; Jia'er Chen; Jinguang Wu
Journal:  Inorg Chem       Date:  2011-12-08       Impact factor: 5.165

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Interactions between metal ions and carbohydrates. Coordination behavior of neutral erythritol to Ca(II) and lanthanide ions.

Authors:  Limin Yang; Yunlan Su; Yizhuang Xu; Zheming Wang; Zonghui Guo; Shifu Weng; Chunhua Yan; Shiwei Zhang; Jinguang Wu
Journal:  Inorg Chem       Date:  2003-09-22       Impact factor: 5.165

4.  Interactions between metal ions and carbohydrates: the coordination behavior of neutral erythritol to zinc and europium nitrate.

Authors:  Limin Yang; Yunlan Su; Yizhuang Xu; Shiwei Zhang; Jinguang Wu; Kui Zhao
Journal:  J Inorg Biochem       Date:  2004-08       Impact factor: 4.155

5.  Prospects of metal complexes peripherally substituted with sugars in biomedicinal applications.

Authors:  Michael Gottschaldt; Ulrich S Schubert
Journal:  Chemistry       Date:  2009       Impact factor: 5.236

6.  (Butane-1,2,3,4-tetraol-κ(3) O (1),O (2),O (3))(ethanol-κO)tris-(nitrato-κ(2) O,O')holmium(III).

Authors:  Xiao-Hui Hua; Jun-Hui Xue; Li-Min Yang; Yi-Zhuang Xu; Jin-Guang Wu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-02-20
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.