Literature DB >> 23723769

(Butane-1,2,3,4-tetraol-κ(3) O (1),O (2),O (3))(ethanol-κO)tris-(nitrato-κ(2) O,O')erbium(III).

Xiao-Hui Hua1, Jun-Hui Xue, Li-Min Yang, Yi-Zhuang Xu, Jin-Guang Wu.   

Abstract

In the title Er(III)-erythritol complex, [Er(NO3)3(C2H5OH)(C4H10O4)], the Er(III) cation is chelated by one erythritol mol-ecule, three nitrate anions and an ethanol mol-ecule, completing an irregular ErO10 coordination geometry. The Er-O bond lengths are in the range 2.348 (3)-2.583 (3) Å. In the crystal, extensive O-H⋯O hydrogen bonding links the mol-ecules into a three-dimensional supra-molecular structure.

Entities:  

Year:  2013        PMID: 23723769      PMCID: PMC3647803          DOI: 10.1107/S1600536813008003

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For crystal structures of related lanthanide nitrateerythritol complexes, see: Gyurcsik & Nagy (2000 ▶); Yang et al. (2003 ▶, 2004 ▶, 2012 ▶). For the isotypic HoIII complex, see: Hua et al. (2013 ▶). For the structure of erythritol, see: Bekoe & Powell (1959 ▶).

Experimental

Crystal data

[Er(NO3)3(C2H6O)(C4H10O4)] M = 521.48 Monoclinic, a = 7.7521 (16) Å b = 12.772 (3) Å c = 15.121 (3) Å β = 100.26 (3)° V = 1473.3 (5) Å3 Z = 4 Mo Kα radiation μ = 5.78 mm−1 T = 173 K 0.23 × 0.20 × 0.06 mm

Data collection

Rigaku Saturn724+ CCD diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2007 ▶) T min = 0.12, T max = 0.35 10846 measured reflections 3359 independent reflections 3174 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.063 S = 1.20 3359 reflections 218 parameters H-atom parameters constrained Δρmax = 1.46 e Å−3 Δρmin = −0.62 e Å−3 Data collection: CrystalClear (Rigaku, 2007 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813008003/xu5657sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813008003/xu5657Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813008003/xu5657Isup3.cdx Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Er(NO3)3(C2H6O)(C4H10O4)]F(000) = 1012
Mr = 521.48Dx = 2.351 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5453 reflections
a = 7.7521 (16) Åθ = 2.1–27.5°
b = 12.772 (3) ŵ = 5.78 mm1
c = 15.121 (3) ÅT = 173 K
β = 100.26 (3)°Plate, pink
V = 1473.3 (5) Å30.23 × 0.20 × 0.06 mm
Z = 4
Rigaku Saturn724+ CCD diffractometer3359 independent reflections
Radiation source: fine-focus sealed tube3174 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.035
Detector resolution: 28.5714 pixels mm-1θmax = 27.5°, θmin = 2.1°
ω scans at fixed χ = 45°h = −10→9
Absorption correction: multi-scan (CrystalClear; Rigaku, 2007)k = −16→16
Tmin = 0.12, Tmax = 0.35l = −19→19
10846 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.063H-atom parameters constrained
S = 1.20w = 1/[σ2(Fo2) + (0.021P)2 + 2.6512P] where P = (Fo2 + 2Fc2)/3
3359 reflections(Δ/σ)max = 0.002
218 parametersΔρmax = 1.46 e Å3
0 restraintsΔρmin = −0.62 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Er10.62537 (2)0.895819 (13)0.247063 (10)0.01275 (7)
O90.6818 (4)1.0948 (2)0.26286 (19)0.0189 (6)
O130.6726 (4)0.7044 (2)0.23165 (19)0.0204 (6)
O60.4323 (4)0.9877 (2)0.12708 (19)0.0228 (6)
O140.9187 (4)0.6272 (2)0.2866 (2)0.0271 (7)
O100.8493 (4)0.9889 (2)0.35026 (19)0.0182 (6)
O110.8904 (4)1.1563 (2)0.3659 (2)0.0265 (7)
N10.4019 (5)0.9082 (3)0.0754 (2)0.0200 (8)
O70.4806 (4)0.8252 (2)0.10336 (18)0.0220 (6)
O80.3011 (4)0.9117 (3)0.0031 (2)0.0280 (7)
N30.8336 (5)0.7066 (3)0.2691 (2)0.0189 (7)
N20.8098 (5)1.0823 (3)0.3274 (2)0.0179 (7)
O50.8049 (4)0.9494 (2)0.14542 (19)0.0206 (6)
H50.76771.00270.11530.025*
C50.9524 (6)0.9070 (4)0.1084 (3)0.0240 (10)
H5A1.02840.86510.15490.029*
H5B1.02330.96530.09060.029*
O120.8972 (4)0.7972 (2)0.2864 (2)0.0220 (6)
C60.8876 (6)0.8393 (4)0.0278 (3)0.0271 (10)
H6A0.81250.78370.04470.041*
H6B0.98780.80790.00630.041*
H6C0.82010.8821−0.02000.041*
O20.3580 (3)0.8114 (2)0.25801 (16)0.0144 (6)
H20.35790.74700.24670.017*
O10.6345 (4)0.8266 (2)0.39163 (17)0.0157 (6)
H10.68130.86000.43750.019*
O30.4312 (4)0.9935 (2)0.32999 (17)0.0156 (6)
H30.39671.05270.31000.019*
C30.2846 (5)0.9375 (3)0.3562 (3)0.0141 (8)
H3A0.17580.95520.31260.017*
C20.3211 (5)0.8219 (3)0.3484 (2)0.0155 (8)
H2A0.21390.78060.35400.019*
O40.2278 (4)1.0783 (2)0.45507 (19)0.0204 (6)
H40.12501.09210.42950.025*
C10.4774 (5)0.7790 (3)0.4124 (3)0.0188 (8)
H1A0.46630.79520.47520.023*
H1B0.48320.70200.40600.023*
C40.2584 (6)0.9690 (3)0.4493 (3)0.0191 (8)
H4A0.15730.93010.46480.023*
H4B0.36370.94960.49350.023*
U11U22U33U12U13U23
Er10.01351 (10)0.01084 (10)0.01385 (10)0.00053 (7)0.00234 (7)0.00034 (6)
O90.0162 (14)0.0161 (15)0.0238 (14)0.0023 (12)0.0024 (12)0.0028 (11)
O130.0159 (14)0.0188 (16)0.0254 (15)0.0029 (13)0.0006 (12)−0.0029 (12)
O60.0266 (17)0.0178 (15)0.0232 (15)0.0030 (13)0.0026 (13)−0.0017 (12)
O140.0247 (17)0.0164 (15)0.0392 (18)0.0115 (14)0.0030 (14)0.0050 (13)
O100.0182 (15)0.0093 (14)0.0254 (14)0.0008 (12)−0.0006 (12)0.0031 (11)
O110.0318 (18)0.0123 (15)0.0330 (17)−0.0075 (14)−0.0008 (14)−0.0056 (13)
N10.0213 (19)0.023 (2)0.0160 (16)−0.0027 (16)0.0049 (14)0.0022 (14)
O70.0269 (16)0.0203 (16)0.0181 (14)0.0069 (14)0.0023 (12)0.0006 (12)
O80.0251 (17)0.0375 (19)0.0188 (15)0.0062 (15)−0.0032 (13)0.0043 (13)
N30.0188 (18)0.0185 (19)0.0198 (16)0.0051 (15)0.0047 (14)0.0024 (14)
N20.0170 (18)0.0167 (18)0.0215 (17)−0.0005 (15)0.0077 (14)0.0012 (14)
O50.0219 (15)0.0179 (15)0.0237 (15)0.0044 (13)0.0090 (12)0.0044 (12)
C50.021 (2)0.028 (2)0.025 (2)−0.0008 (19)0.0086 (18)−0.0017 (18)
O120.0195 (15)0.0134 (15)0.0325 (16)−0.0018 (13)0.0028 (13)−0.0011 (12)
C60.033 (3)0.020 (2)0.028 (2)0.005 (2)0.007 (2)−0.0003 (18)
O20.0174 (14)0.0099 (13)0.0161 (13)−0.0012 (11)0.0032 (11)−0.0025 (10)
O10.0159 (14)0.0152 (14)0.0149 (13)−0.0022 (12)−0.0001 (11)−0.0007 (11)
O30.0186 (15)0.0097 (13)0.0194 (13)0.0007 (11)0.0060 (11)0.0017 (10)
C30.0117 (18)0.0124 (19)0.0182 (18)−0.0020 (16)0.0032 (15)−0.0011 (15)
C20.017 (2)0.0118 (19)0.0185 (18)−0.0049 (16)0.0055 (15)−0.0013 (15)
O40.0221 (16)0.0169 (15)0.0216 (14)0.0046 (13)0.0024 (12)−0.0051 (11)
C10.016 (2)0.018 (2)0.023 (2)−0.0033 (17)0.0034 (16)0.0031 (16)
C40.023 (2)0.019 (2)0.0160 (18)−0.0012 (18)0.0037 (16)−0.0030 (16)
Er1—O12.348 (3)C5—H5A0.9900
Er1—O22.368 (3)C5—H5B0.9900
Er1—O32.463 (3)C6—H6A0.9800
Er1—O52.352 (3)C6—H6B0.9800
Er1—O62.438 (3)C6—H6C0.9800
Er1—O72.434 (3)O2—C21.451 (4)
Er1—O92.583 (3)O2—H20.8400
Er1—O102.428 (3)O1—C11.445 (5)
Er1—O122.436 (3)O1—H10.8400
Er1—O132.489 (3)O3—C31.456 (4)
O9—N21.271 (5)O3—H30.8400
O13—N31.275 (4)C3—C21.512 (5)
O6—N11.278 (4)C3—C41.512 (5)
O14—N31.212 (4)C3—H3A1.0000
O10—N21.265 (4)C2—C11.512 (6)
O11—N21.223 (5)C2—H2A1.0000
N1—O81.226 (5)O4—C41.422 (5)
N1—O71.259 (5)O4—H40.8400
N3—O121.267 (4)C1—H1A0.9900
O5—C51.464 (5)C1—H1B0.9900
O5—H50.8401C4—H4A0.9900
C5—C61.505 (6)C4—H4B0.9900
O1—Er1—O5142.67 (10)O12—N3—O13115.2 (3)
O1—Er1—O269.20 (9)O11—N2—O10121.4 (4)
O5—Er1—O2143.66 (10)O11—N2—O9122.1 (4)
O1—Er1—O1071.74 (9)O10—N2—O9116.5 (3)
O5—Er1—O1080.73 (10)C5—O5—Er1137.4 (2)
O2—Er1—O10135.43 (9)C5—O5—H5107.9
O1—Er1—O7128.62 (10)Er1—O5—H5113.8
O5—Er1—O775.93 (10)O5—C5—C6110.6 (4)
O2—Er1—O767.89 (9)O5—C5—H5A109.5
O10—Er1—O7156.65 (10)C6—C5—H5A109.5
O1—Er1—O1272.33 (10)O5—C5—H5B109.5
O5—Er1—O1273.94 (10)C6—C5—H5B109.5
O2—Er1—O12118.51 (9)H5A—C5—H5B108.1
O10—Er1—O1266.91 (10)N3—O12—Er197.7 (2)
O7—Er1—O12105.52 (10)C5—C6—H6A109.5
O1—Er1—O6141.92 (10)C5—C6—H6B109.5
O5—Er1—O674.32 (10)H6A—C6—H6B109.5
O2—Er1—O680.93 (10)C5—C6—H6C109.5
O10—Er1—O6121.09 (10)H6A—C6—H6C109.5
O7—Er1—O652.40 (10)H6B—C6—H6C109.5
O12—Er1—O6145.13 (10)C2—O2—Er1110.2 (2)
O1—Er1—O368.68 (9)C2—O2—H2106.7
O5—Er1—O3132.20 (9)Er1—O2—H2113.6
O2—Er1—O364.73 (9)C1—O1—Er1118.3 (2)
O10—Er1—O381.76 (9)C1—O1—H1106.9
O7—Er1—O3114.57 (10)Er1—O1—H1120.9
O12—Er1—O3135.89 (10)C3—O3—Er1117.9 (2)
O6—Er1—O377.59 (9)C3—O3—H3109.0
O1—Er1—O1374.73 (9)Er1—O3—H3117.2
O5—Er1—O1396.36 (10)O3—C3—C2107.0 (3)
O2—Er1—O1372.82 (9)O3—C3—C4111.3 (3)
O10—Er1—O13116.15 (9)C2—C3—C4113.0 (3)
O7—Er1—O1366.70 (10)O3—C3—H3A108.5
O12—Er1—O1351.66 (9)C2—C3—H3A108.5
O6—Er1—O13118.97 (10)C4—C3—H3A108.5
O3—Er1—O13131.19 (9)O2—C2—C3103.6 (3)
O1—Er1—O9107.95 (9)O2—C2—C1107.5 (3)
O5—Er1—O970.35 (9)C3—C2—C1116.3 (3)
O2—Er1—O9125.27 (9)O2—C2—H2A109.7
O10—Er1—O950.86 (9)C3—C2—H2A109.7
O7—Er1—O9119.40 (10)C1—C2—H2A109.7
O12—Er1—O9111.18 (10)C4—O4—H4109.4
O6—Er1—O970.51 (10)O1—C1—C2108.6 (3)
O3—Er1—O964.11 (9)O1—C1—H1A110.0
O13—Er1—O9161.77 (10)C2—C1—H1A110.0
N2—O9—Er192.5 (2)O1—C1—H1B110.0
N3—O13—Er194.9 (2)C2—C1—H1B110.0
N1—O6—Er195.4 (2)H1A—C1—H1B108.4
N2—O10—Er1100.1 (2)O4—C4—C3111.7 (3)
O8—N1—O7121.6 (4)O4—C4—H4A109.3
O8—N1—O6122.4 (4)C3—C4—H4A109.3
O7—N1—O6116.0 (3)O4—C4—H4B109.3
N1—O7—Er196.1 (2)C3—C4—H4B109.3
O14—N3—O12122.8 (4)H4A—C4—H4B107.9
O14—N3—O13122.0 (4)
D—H···AD—HH···AD···AD—H···A
O1—H1···O4i0.841.832.666 (4)173
O2—H2···O9ii0.841.972.795 (4)167
O3—H3···O13iii0.842.082.917 (4)175
O4—H4···O11iv0.842.072.897 (5)169
O5—H5···O8v0.842.092.865 (4)154
Table 1

Selected bond lengths (Å)

Er1—O12.348 (3)
Er1—O22.368 (3)
Er1—O32.463 (3)
Er1—O52.352 (3)
Er1—O62.438 (3)
Er1—O72.434 (3)
Er1—O92.583 (3)
Er1—O102.428 (3)
Er1—O122.436 (3)
Er1—O132.489 (3)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯O4i 0.841.832.666 (4)173
O2—H2⋯O9ii 0.841.972.795 (4)167
O3—H3⋯O13iii 0.842.082.917 (4)175
O4—H4⋯O11iv 0.842.072.897 (5)169
O5—H5⋯O8v 0.842.092.865 (4)154

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  5 in total

1.  Interactions between metal ions and carbohydrates. Spectroscopic characterization and the topology coordination behavior of erythritol with trivalent lanthanide ions.

Authors:  Limin Yang; Xiaohui Hua; Junhui Xue; Qinghua Pan; Lei Yu; Weihong Li; Yizhuang Xu; Guozhong Zhao; Liming Liu; Kexin Liu; Jia'er Chen; Jinguang Wu
Journal:  Inorg Chem       Date:  2011-12-08       Impact factor: 5.165

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Interactions between metal ions and carbohydrates. Coordination behavior of neutral erythritol to Ca(II) and lanthanide ions.

Authors:  Limin Yang; Yunlan Su; Yizhuang Xu; Zheming Wang; Zonghui Guo; Shifu Weng; Chunhua Yan; Shiwei Zhang; Jinguang Wu
Journal:  Inorg Chem       Date:  2003-09-22       Impact factor: 5.165

4.  Interactions between metal ions and carbohydrates: the coordination behavior of neutral erythritol to zinc and europium nitrate.

Authors:  Limin Yang; Yunlan Su; Yizhuang Xu; Shiwei Zhang; Jinguang Wu; Kui Zhao
Journal:  J Inorg Biochem       Date:  2004-08       Impact factor: 4.155

5.  (Butane-1,2,3,4-tetraol-κ(3) O (1),O (2),O (3))(ethanol-κO)tris-(nitrato-κ(2) O,O')holmium(III).

Authors:  Xiao-Hui Hua; Jun-Hui Xue; Li-Min Yang; Yi-Zhuang Xu; Jin-Guang Wu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-02-20
  5 in total

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